SMTL ID : 2eum.1

Crystal structure of human Glycolipid Transfer Protein complexed with 8:0 Lactosylceramide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x BGC- GAL: beta-D-galactopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-GAL.1: 8 residues within 4Å: Chain A: D.48, N.52, K.55, L.92, W.96, Y.207 Ligands: SPH.2, OCA.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.48, A:N.52, A:N.52, A:N.52, A:K.55, A:K.55 Water bridges: A:A.93

1 x SPH: SPHINGOSINE(Non-covalent)

SPH.2: 6 residues within 4Å: Chain A: P.44, D.48, W.96, I.147 Ligands: BGC-GAL.1, OCA.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.44, A:W.96, A:I.147 Hydrogen bonds: A:D.48

1 x OCA: OCTANOIC ACID (CAPRYLIC ACID)(Non-covalent)

OCA.3: 9 residues within 4Å: Chain A: F.34, I.45, D.48, W.96, F.103, L.136, H.140 Ligands: BGC-GAL.1, SPH.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.34, A:I.45, A:F.103, A:F.103, A:L.136, A:L.136

1 x OCT: N-OCTANE(Non-covalent)

OCT.4: 8 residues within 4Å: Chain A: L.24, E.25, S.28, P.31, S.50, I.53, T.54, K.57 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.31, A:I.53, A:K.57

1 x D10: DECANE(Non-covalent)

D10.5: 8 residues within 4Å: Chain A: L.4, F.33, F.34, L.37, F.42, I.104, F.107, L.108 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.4, A:F.33, A:F.34, A:F.34, A:L.37, A:F.42, A:I.104, A:F.107, A:F.107, A:L.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malinina, L. et al., The liganding of glycolipid transfer protein is controlled by glycolipid acyl structure. Plos Biol. (2006)

Release Date

2006-11-14

Peptides

Glycolipid transfer protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycolipid transfer protein

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