SMTL ID : 2evl.1

Crystal structure of human Glycolipid Transfer Protein complexed with 18:2 Galactosylceramide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x GAL: beta-D-galactopyranose(Non-covalent)

GAL.1: 6 residues within 4Å: Chain A: D.48, N.52, K.55, W.96, Y.207 Ligands: SPH.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.48, A:N.52, A:N.52, A:K.55, A:K.55 Water bridges: A:D.48

1 x SPH: SPHINGOSINE(Non-covalent)

SPH.2: 5 residues within 4Å: Chain A: D.48, W.96, I.147 Ligands: GAL.1, EIC.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.96, A:I.147 Hydrogen bonds: A:D.48

1 x EIC: LINOLEIC ACID(Non-covalent)

EIC.3: 16 residues within 4Å: Chain A: F.34, L.37, F.42, I.45, D.48, W.96, F.103, F.107, A.128, L.136, H.140, F.148, A.151, L.152 Ligands: SPH.2, LNK.4 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.34, A:L.37, A:F.42, A:I.45, A:I.45, A:F.103, A:F.103, A:F.107, A:A.128, A:L.136, A:L.136, A:F.148, A:F.148, A:L.152

1 x LNK: PENTANE(Non-covalent)

LNK.4: 5 residues within 4Å: Chain A: L.30, F.33, F.34, I.104 Ligands: EIC.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.33, A:F.34, A:I.104

1 x OCT: N-OCTANE(Non-covalent)

OCT.5: 7 residues within 4Å: Chain A: L.24, E.25, S.28, P.31, S.50, I.53, T.54 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.24, A:P.31, A:I.53, A:I.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malinina, L. et al., The liganding of glycolipid transfer protein is controlled by glycolipid acyl structure. Plos Biol. (2006)

Release Date

2006-11-14

Peptides

Glycolipid transfer protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycolipid transfer protein

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