SMTL ID : 2exa.1

Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with FAROM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x DGF: (2R,5R)-2-[(2S,3R)-3-HYDROXY-1-OXOBUTAN-2-YL]-5-[(2R)-TETRAHYDROFURAN-2-YL]-2,5-DIHYDRO-1,3-THIAZOLE-4-CARBOXYLIC ACID(Covalent)

DGF.1: 9 residues within 4Å: Chain A: A.42, S.43, F.141, S.287, N.289, G.339, L.340, G.400, S.401 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.340 Hydrogen bonds: A:S.43, A:S.287, A:S.338, A:S.401

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: L.373, K.394, S.396, F.411, I.412, T.413, R.419 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.412, A:T.413, A:R.419

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kishida, H. et al., Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, both in the native form and covalently linked to various antibiotics. Biochemistry (2006)

Release Date

2006-06-13

Peptides

Penicillin-binding protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Penicillin-binding protein 4

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