SMTL ID : 2f0y.1

Crystal Structure Of Human Protein Farnesyltransferase Complexed With Farnesyl Diphosphate and hydantoin derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain B: D.297, C.299, Y.361, H.362 Ligands: 3MN.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.297, B:D.297, B:C.299, B:H.362

1 x FPP: FARNESYL DIPHOSPHATE(Non-covalent)

FPP.2: 15 residues within 4Å: Chain A: K.164, Y.166, H.201 Chain B: R.202, Y.205, H.248, G.250, Y.251, C.254, R.291, K.294, Y.300, W.303, Y.361 Ligands: 3MN.3 18 PLIP interactions: 16 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:R.202, B:Y.205, B:Y.251, B:W.303, B:W.303 Hydrogen bonds: B:Y.300 Water bridges: B:G.290, B:R.291, B:R.291, B:K.294, B:L.295, A:Y.200 Salt bridges: B:H.248, B:R.291, B:R.291, B:K.294, B:K.294, A:K.164

1 x 3MN: 3-({3-[3-(1H-IMIDAZOL-1-YL)PROPYL]-5-METHYL-5-(1-NAPHTHYL)-2,4-DIOXOIMIDAZOLIDIN-1-YL}METHYL)BENZONITRILE(Non-covalent)

3MN.3: 14 residues within 4Å: Chain B: Y.93, L.96, S.99, W.102, W.106, D.297, C.299, Y.300, D.359, F.360, Y.361, H.362 Ligands: ZN.1, FPP.2 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:L.96, B:L.96, B:W.106, B:D.359, B:Y.361, B:Y.361, B:Y.361 Hydrogen bonds: B:Y.93, B:F.360, B:Y.361 pi-Stacking: B:W.102, B:W.102, B:W.106, B:W.106 pi-Cation interactions: B:H.362

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, J. et al., hydantoin derivatives as Non-pepridic inhibitors of Ras Farnesyl transferase. To be published

Release Date

2006-11-14

Peptides

Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit: A
Protein farnesyltransferase beta subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit

Protein farnesyltransferase beta subunit

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