SMTL ID : 2fe4.1

The crystal structure of human neuronal Rab6B in its inactive GDP-bound form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: T.16, Q.32, T.34, D.57 Ligands: NO3.2, GDP.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.16, A:T.34, H2O.1, H2O.1

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 9 residues within 4Å: Chain A: Q.11, S.12, K.15, Q.32, T.34, T.58, G.60 Ligands: MG.1, GDP.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.12, A:K.15, A:Q.32, A:T.34, A:G.60

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 22 residues within 4Å: Chain A: E.10, Q.11, S.12, V.13, G.14, K.15, T.16, S.17, F.27, D.28, N.29, T.30, Q.32, N.115, K.116, D.118, L.119, S.145, A.146, K.147 Ligands: MG.1, NO3.2 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:S.12, A:V.13, A:G.14, A:K.15, A:T.16, A:S.17, A:S.17, A:D.28, A:N.115, A:K.116, A:K.116, A:A.146, A:K.147 Water bridges: A:Q.32, A:Q.32 Salt bridges: A:K.15, A:D.118 pi-Stacking: A:F.27, A:F.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garcia-Saez, I. et al., The structure of human neuronal Rab6B in the active and inactive form. Acta Crystallogr.,Sect.D (2006)

Release Date

2006-07-04

Peptides

Ras-related protein Rab-6B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ras-related protein Rab-6B

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