SMTL ID : 2fwo.1

MHC Class I H-2Kd heavy chain in complex with beta-2microglobulin and peptide derived from influenza nucleoprotein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x THR- TYR- GLN- ARG- THR- ARG- ALA- LEU- VAL: TYQRTRALV peptide from Nucleoprotein(Non-covalent)

THR-TYR-GLN-ARG-THR-ARG-ALA-LEU-VAL.1: 30 residues within 4Å: Chain A: L.5, Y.7, V.9, F.22, F.45, E.62, Q.63, Q.65, R.66, S.69, D.70, W.73, S.77, T.80, Y.84, F.95, R.97, F.99, Q.114, Y.123, T.143, K.146, W.147, D.152, Y.155, Y.156, Y.159, E.163, W.167, Y.171 41 PLIP interactions: 41 interactions with chain A Hydrophobic interactions: A:Y.7, A:V.9, A:F.45, A:R.66, A:R.66, A:W.73, A:W.73, A:W.73, A:Y.84, A:F.95, A:F.99, A:T.143, A:W.147 Hydrogen bonds: A:Y.7, A:Y.7, A:Q.63, A:Q.63, A:R.66, A:S.69, A:S.69, A:D.70, A:D.70, A:D.70, A:S.77, A:Y.84, A:R.97, A:R.97, A:Q.114, A:K.146, A:D.152, A:Y.155, A:Y.156, A:W.167, A:Y.171 Water bridges: A:R.66, A:S.77, A:T.80 Salt bridges: A:E.62, A:K.146, A:D.152 pi-Cation interactions: A:Y.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mitaksov, V. et al., Structural Definition of the H-2Kd Peptide-binding Motif. J.Biol.Chem. (2006)

Release Date

2006-02-21

Peptides

H-2 class I histocompatibility antigen, K-D alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

H-2 class I histocompatibility antigen, K-D alpha chain

Beta-2-microglobulin

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