SMTL ID : 1fg2.2 (3 other biounits)

CRYSTAL STRUCTURE OF THE LCMV PEPTIDIC EPITOPE GP33 IN COMPLEX WITH THE MURINE CLASS I MHC MOLECULE H-2DB

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

hetero-1-1-mer

Ligands

1 x LYS- ALA- VAL- TYR- ASN- PHE- ALA- THR- CYS: LCMV PEPTIDIC EPITOPE GP33(Non-covalent)

LYS-ALA-VAL-TYR-ASN-PHE-ALA-THR-CYS.1: 27 residues within 4Å: Chain A: M.6, Y.8, E.10, Y.46, R.63, E.64, K.67, Q.71, W.74, V.77, S.78, N.81, Y.85, Q.98, S.100, F.117, T.144, K.147, W.148, S.151, A.153, H.156, Y.157, Y.160, E.164, W.168, Y.172 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:Y.8, A:W.74, A:V.77, A:A.153, A:Y.160, A:Y.160, A:W.168 Hydrogen bonds: A:Y.8, A:E.64, A:K.67, A:K.67, A:Q.71, A:Q.71, A:S.78, A:N.81, A:Q.98, A:Q.98, A:T.144, A:K.147, A:Y.157, A:Y.160, A:Y.172 Salt bridges: A:K.147 pi-Stacking: A:H.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tissot, A.C. et al., Viral escape at the molecular level explained by quantitative T-cell receptor/peptide/MHC interactions and the crystal structure of a peptide/MHC complex. J.Mol.Biol. (2000)

Release Date

2000-10-04

Peptides

H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN: A
BETA-2 MICROGLOBULIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN

BETA-2 MICROGLOBULIN

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