SMTL ID : 2g96.1

Crystal Structure of Visfatin/Pre-B Cell Colony Enhancing Factor 1/Nicotinamide Phosphoribosyltransferase In Complex with Niconamide Mononucleotide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

2 x NMN: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE(Non-covalent)

NMN.1: 13 residues within 4Å: Chain A: F.193, R.196, D.219, A.244, R.311, D.313, G.353, D.354, G.383, G.384 Chain B: D.16, Y.18, R.392 15 PLIP interactions: 3 interactions with chain B, 12 interactions with chain A Hydrophobic interactions: B:Y.18, B:Y.18, A:F.193 Salt bridges: B:R.392 Hydrogen bonds: A:R.311, A:R.311, A:D.313, A:G.353, A:D.354, A:D.354, A:G.383, A:G.384 Water bridges: A:A.385, A:A.385 pi-Stacking: A:F.193 NMN.2: 13 residues within 4Å: Chain A: D.16, Y.18, R.392, D.393 Chain B: F.193, R.196, D.219, A.244, R.311, D.313, G.353, G.383, G.384 14 PLIP interactions: 7 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:D.16, A:Y.18, A:Y.18, B:F.193 Hydrogen bonds: A:D.393, B:R.311, B:R.311, B:G.353, B:G.383, B:G.384 Water bridges: A:R.392, A:R.392 Salt bridges: A:R.392 pi-Stacking: B:F.193

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, M.-K. et al., Crystal Structure of Visfatin/Pre-B Cell Colony-enhancing Factor 1/Nicotinamide Phosphoribosyltransferase, Free and in Complex with the Anti-cancer Agent FK-866. J.Mol.Biol. (2006)

Release Date

2006-08-01

Peptides

Nicotinamide phosphoribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nicotinamide phosphoribosyltransferase

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