SMTL ID : 3g8e.1

Crystal Structure of Rattus norvegicus Visfatin/PBEF/Nampt in Complex with an FK866-based inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

2 x IS1: 3-[(1E)-3-oxo-3-({4-[1-(phenylcarbonyl)piperidin-4-yl]butyl}amino)prop-1-en-1-yl]-1-beta-D-ribofuranosylpyridinium(Non-covalent)

IS1.1: 22 residues within 4Å: Chain A: Y.188, F.193, R.196, D.219, V.242, A.244, S.275, P.307, I.309, R.311, D.313, R.349, V.350, I.351, G.353, E.376, N.377, V.378, S.379 Chain B: D.16, Y.18, R.392 14 PLIP interactions: 10 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:F.193, A:F.193, A:V.242, A:I.309, A:I.351, B:D.16, B:Y.18 Hydrogen bonds: A:R.196, A:D.219, A:S.275, A:R.311, B:R.392, B:R.392 pi-Stacking: A:F.193 IS1.2: 21 residues within 4Å: Chain A: D.16, Y.18, R.392 Chain B: Y.188, K.189, F.193, R.196, D.219, V.242, A.244, S.275, I.309, R.311, D.313, R.349, V.350, G.353, E.376, N.377, V.378, S.379 12 PLIP interactions: 2 interactions with chain A, 10 interactions with chain B Hydrogen bonds: A:R.392, B:S.275, B:R.311, B:R.311 pi-Stacking: A:Y.18, B:F.193 Hydrophobic interactions: B:F.193, B:V.242, B:V.242, B:I.309, B:R.349, B:R.349

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, G.B. et al., Crystal structure of Rattus norvegicus Visfatin/PBEF/Nampt in complex with an FK866-based inhibitor. Mol.Cells (2009)

Release Date

2009-08-18

Peptides

Nicotinamide phosphoribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nicotinamide phosphoribosyltransferase

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