SMTL ID : 2g97.1

Crystal Structure of Visfatin/Pre-B Cell Colony Enhancing Factor 1/Nicotinamide Phosphoribosyltransferase In Complex with the Specific Inhibitor FK-866

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

2 x DGB: (2E)-N-{4-[1-(BENZENECARBONYL)PIPERIDIN-4-YL]BUTYL}-3-(PYRIDIN-3-YL)PROP-2-ENAMIDE(Non-covalent)

DGB.1: 20 residues within 4Å: Chain A: Y.188, K.189, H.191, F.193, D.219, V.242, P.243, A.244, S.275, P.307, I.309, R.311, R.349, V.350, I.351, E.376, N.377, V.378, S.379 Chain B: Y.18 13 PLIP interactions: 12 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:H.191, A:F.193, A:V.242, A:V.242, A:A.244, A:R.349, A:R.349 Hydrogen bonds: A:D.219, A:V.242, A:S.275 Water bridges: A:V.242 pi-Stacking: A:F.193, B:Y.18 DGB.2: 17 residues within 4Å: Chain A: Y.18 Chain B: Y.188, H.191, F.193, R.196, D.219, V.242, A.244, S.275, I.309, R.311, R.349, V.350, E.376, N.377, V.378, S.379 11 PLIP interactions: 2 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:Y.18, A:Y.18, B:F.193, B:V.242, B:A.244, B:R.349, B:R.349 Hydrogen bonds: B:R.196, B:D.219, B:S.275 pi-Stacking: B:F.193

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, M.-K. et al., Crystal Structure of Visfatin/Pre-B Cell Colony-enhancing Factor 1/Nicotinamide Phosphoribosyltransferase, Free and in Complex with the Anti-cancer Agent FK-866. J.Mol.Biol. (2006)

Release Date

2006-08-01

Peptides

Nicotinamide phosphoribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nicotinamide phosphoribosyltransferase

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