SMTL ID : 2gb0.2 (1 other biounit)

Monomeric sarcosine oxidase: structure of a covalently flavinylated amine oxidizing enzyme

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 1 residues within 4Å: Chain A: S.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.1, A:S.1 Water bridges: A:S.1, A:T.2, A:S.191, A:S.191 PO4.2: 3 residues within 4Å: Chain A: H.81, N.151, R.154 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.151, A:N.151 Water bridges: A:H.81, A:H.81, A:K.82 Salt bridges: A:H.81, A:R.154 PO4.3: 8 residues within 4Å: Chain A: H.53, L.113, T.114, V.115, E.141, P.142, N.143, S.144 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.114, A:E.141, A:E.141, A:N.143, A:N.143 Water bridges: A:H.53 Salt bridges: A:H.53

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 7 residues within 4Å: Chain A: M.316, Y.317, T.318, F.342, S.343, G.344 Ligands: FAD.5 Ligand excluded by PLIP

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.5: 36 residues within 4Å: Chain A: V.9, G.10, G.12, S.13, M.14, V.32, D.33, A.34, F.35, H.39, G.42, S.43, H.44, R.49, I.50, T.171, R.172, V.173, S.200, M.201, G.202, W.204, L.208, Q.223, V.225, Y.254, C.315, M.316, Y.317, F.342, G.344, H.345, G.346, F.347, K.348 Ligands: CL.4 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:V.225, A:Y.254, A:Y.317 Hydrogen bonds: A:S.13, A:S.13, A:M.14, A:A.34, A:F.35, A:H.39, A:S.43, A:R.49, A:R.49, A:I.50, A:I.50, A:V.173, A:V.173, A:G.202, A:G.346, A:F.347, A:K.348, A:K.348 Water bridges: A:G.12, A:G.15, A:R.49, A:R.49, A:A.203, A:Y.317 Salt bridges: A:H.44 pi-Stacking: A:Y.317 pi-Cation interactions: A:R.49, A:R.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trickey, P. et al., Monomeric Sarcosine Oxidase: Structure of a Covalently Flavinylated Amine Oxidizing Enzyme. Structure (1999)

Release Date

2006-03-21

Peptides

Monomeric sarcosine oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Monomeric sarcosine oxidase

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