SMTL ID : 2gf3.2 (1 other biounit)

Structure of the complex of monomeric sarcosine with its substrate analogue inhibitor 2-furoic acid at 1.3 A resolution.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: Y.317, T.318, F.342, S.343, G.344 Ligands: FAD.5 Ligand excluded by PLIP

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 8 residues within 4Å: Chain A: H.53, L.113, T.114, V.115, E.141, P.142, N.143, S.144 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.141, A:E.141, A:N.143, A:N.143 Water bridges: A:H.53, A:T.114 Salt bridges: A:H.53 PO4.3: 3 residues within 4Å: Chain A: H.81, N.151, R.154 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.151, A:N.151 Water bridges: A:R.154 Salt bridges: A:H.81, A:R.154

2 x FOA: 2-FUROIC ACID(Non-covalent)

FOA.4: 7 residues within 4Å: Chain A: P.217, L.218, Q.219, Y.221, K.319, T.320, L.321 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:P.217, A:Q.219, A:L.321 Hydrogen bonds: A:Y.221 Water bridges: A:Q.219, A:K.274, A:K.274 Salt bridges: A:K.274 FOA.6: 9 residues within 4Å: Chain A: I.50, R.52, M.245, Y.254, H.269, G.344, H.345, K.348 Ligands: FAD.5 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.50, A:Y.254 Salt bridges: A:R.52, A:K.348 pi-Stacking: A:Y.254

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.5: 37 residues within 4Å: Chain A: V.9, G.10, G.12, S.13, M.14, V.32, D.33, A.34, F.35, H.39, G.42, S.43, H.44, R.49, I.50, T.171, R.172, V.173, S.200, M.201, G.202, W.204, L.208, Q.223, V.225, Y.254, C.315, M.316, Y.317, F.342, G.344, H.345, G.346, F.347, K.348 Ligands: CL.1, FOA.6 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:V.225, A:Y.317 Hydrogen bonds: A:S.13, A:S.13, A:M.14, A:A.34, A:F.35, A:H.39, A:S.43, A:R.49, A:R.49, A:I.50, A:I.50, A:V.173, A:V.173, A:G.202, A:G.346, A:F.347, A:K.348, A:K.348 Water bridges: A:G.12, A:G.15, A:R.49, A:R.49, A:A.203 Salt bridges: A:H.44 pi-Stacking: A:Y.317 pi-Cation interactions: A:R.49, A:R.49

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 5 residues within 4Å: Chain A: T.85, K.86, T.87, N.237, D.240 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.237, A:N.237 Water bridges: A:T.87, A:T.87, A:D.240, A:D.240, A:D.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Z. et al., Structure of the complex of monomeric sarcosine with its substrate analogue inhibitor 2-furoic acid at 1.3 A resolution. TO BE PUBLISHED

Release Date

2007-02-06

Peptides

Monomeric sarcosine oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Monomeric sarcosine oxidase

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