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SMTL ID : 2gj3.1
(5 other biounits)
Crystal structure of the FAD-containing PAS domain of the protein NifL from Azotobacter vinelandii.
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.04 Å
Oligo State
homo-dimer
Ligands
4 x
SO4
:
SULFATE ION
(Non-functional Binders)
SO4.1:
0 residues within 4Å:
(No contacts)
1
PLIP interactions
:
1 interactions with chain A
Hydrogen bonds:
A:E.102
SO4.2:
2 residues within 4Å:
Chain A:
K.87
Ligands:
SO4.3
2
PLIP interactions
:
2 interactions with chain A
Water bridges:
A:K.87
Salt bridges:
A:K.87
SO4.3:
2 residues within 4Å:
Chain A:
K.87
Ligands:
SO4.2
3
PLIP interactions
:
3 interactions with chain A
Water bridges:
A:K.87
,
A:K.87
Salt bridges:
A:K.87
SO4.5:
2 residues within 4Å:
Chain B:
N.101
,
E.102
3
PLIP interactions
:
3 interactions with chain B
Hydrogen bonds:
B:E.102
Water bridges:
B:N.101
,
B:A.103
2 x
FAD
:
FLAVIN-ADENINE DINUCLEOTIDE
(Non-covalent)
FAD.4:
20 residues within 4Å:
Chain A:
T.21
,
L.23
,
K.24
,
A.25
,
N.49
,
E.50
,
S.51
,
L.53
,
S.54
,
R.60
,
Y.63
,
W.67
,
L.70
,
L.80
,
N.82
,
L.94
,
V.96
,
Y.109
,
L.110
,
G.111
26
PLIP interactions
:
26 interactions with chain A
Hydrophobic interactions:
A:T.21
,
A:A.25
,
A:E.50
,
A:E.50
,
A:W.67
,
A:L.70
,
A:V.96
Hydrogen bonds:
A:N.49
,
A:E.50
,
A:S.51
,
A:S.54
,
A:Y.63
,
A:W.67
,
A:N.82
,
A:N.82
Water bridges:
A:N.49
,
A:S.54
,
A:N.55
,
A:R.60
,
A:R.60
,
A:H.113
Salt bridges:
A:R.60
,
A:R.60
pi-Stacking:
A:W.67
,
A:W.67
,
A:W.67
FAD.6:
19 residues within 4Å:
Chain B:
T.21
,
A.25
,
N.49
,
E.50
,
S.51
,
L.53
,
S.54
,
R.60
,
Y.63
,
Q.64
,
W.67
,
L.70
,
L.80
,
N.82
,
L.94
,
V.96
,
Y.109
,
L.110
,
G.111
19
PLIP interactions
:
19 interactions with chain B
Hydrophobic interactions:
B:T.21
,
B:A.25
,
B:E.50
,
B:L.70
,
B:V.96
,
B:Y.109
,
B:Y.109
Hydrogen bonds:
B:S.51
,
B:S.51
,
B:S.54
,
B:S.54
,
B:R.60
,
B:N.82
,
B:N.82
Water bridges:
B:Q.64
Salt bridges:
B:R.60
pi-Stacking:
B:W.67
,
B:W.67
,
B:W.67
1 x
EOH
:
ETHANOL
(Non-functional Binders)
EOH.7:
1 residues within 4Å:
Chain B:
H.13
1
PLIP interactions
:
1 interactions with chain B
Hydrophobic interactions:
B:H.13
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Key, J. et al., Structure of the redox sensor domain of Azotobacter vinelandii NifL at atomic resolution: signaling, dimerization, and mechanism. Biochemistry (2007)
Release Date
2007-03-06
Peptides
Nitrogen fixation regulatory protein:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
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3D Viewer
NGL
PV
2D
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PNG
Nitrogen fixation regulatory protein
Related Entries With Identical Sequence
2gj3.2
|
2gj3.3
|
2gj3.4
|
2gj3.5
|
2gj3.6
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme