- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.04 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 6 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
FAD.4: 20 residues within 4Å:- Chain A: T.21, L.23, K.24, A.25, N.49, E.50, S.51, L.53, S.54, R.60, Y.63, W.67, L.70, L.80, N.82, L.94, V.96, Y.109, L.110, G.111
26 PLIP interactions:26 interactions with chain A- Hydrophobic interactions: A:T.21, A:A.25, A:E.50, A:E.50, A:W.67, A:L.70, A:V.96
- Hydrogen bonds: A:N.49, A:E.50, A:S.51, A:S.54, A:Y.63, A:W.67, A:N.82, A:N.82
- Water bridges: A:N.49, A:S.54, A:N.55, A:R.60, A:R.60, A:H.113
- Salt bridges: A:R.60, A:R.60
- pi-Stacking: A:W.67, A:W.67, A:W.67
FAD.6: 19 residues within 4Å:- Chain B: T.21, A.25, N.49, E.50, S.51, L.53, S.54, R.60, Y.63, Q.64, W.67, L.70, L.80, N.82, L.94, V.96, Y.109, L.110, G.111
19 PLIP interactions:19 interactions with chain B- Hydrophobic interactions: B:T.21, B:A.25, B:E.50, B:L.70, B:V.96, B:Y.109, B:Y.109
- Hydrogen bonds: B:S.51, B:S.51, B:S.54, B:S.54, B:R.60, B:N.82, B:N.82
- Water bridges: B:Q.64
- Salt bridges: B:R.60
- pi-Stacking: B:W.67, B:W.67, B:W.67
FAD.11: 20 residues within 4Å:- Chain C: T.21, L.23, K.24, A.25, N.49, E.50, S.51, L.53, S.54, R.60, Y.63, W.67, L.70, L.80, N.82, L.94, V.96, Y.109, L.110, G.111
26 PLIP interactions:26 interactions with chain C- Hydrophobic interactions: C:T.21, C:A.25, C:E.50, C:E.50, C:W.67, C:L.70, C:V.96
- Hydrogen bonds: C:N.49, C:E.50, C:S.51, C:S.54, C:Y.63, C:W.67, C:N.82, C:N.82
- Water bridges: C:N.49, C:S.54, C:N.55, C:R.60, C:R.60, C:H.113
- Salt bridges: C:R.60, C:R.60
- pi-Stacking: C:W.67, C:W.67, C:W.67
FAD.13: 19 residues within 4Å:- Chain D: T.21, A.25, N.49, E.50, S.51, L.53, S.54, R.60, Y.63, Q.64, W.67, L.70, L.80, N.82, L.94, V.96, Y.109, L.110, G.111
19 PLIP interactions:19 interactions with chain D- Hydrophobic interactions: D:T.21, D:A.25, D:E.50, D:L.70, D:V.96, D:Y.109, D:Y.109
- Hydrogen bonds: D:S.51, D:S.51, D:S.54, D:S.54, D:R.60, D:N.82, D:N.82
- Water bridges: D:Q.64
- Salt bridges: D:R.60
- pi-Stacking: D:W.67, D:W.67, D:W.67
FAD.18: 20 residues within 4Å:- Chain E: T.21, L.23, K.24, A.25, N.49, E.50, S.51, L.53, S.54, R.60, Y.63, W.67, L.70, L.80, N.82, L.94, V.96, Y.109, L.110, G.111
26 PLIP interactions:26 interactions with chain E- Hydrophobic interactions: E:T.21, E:A.25, E:E.50, E:E.50, E:W.67, E:L.70, E:V.96
- Hydrogen bonds: E:N.49, E:E.50, E:S.51, E:S.54, E:Y.63, E:W.67, E:N.82, E:N.82
- Water bridges: E:N.49, E:S.54, E:N.55, E:R.60, E:R.60, E:H.113
- Salt bridges: E:R.60, E:R.60
- pi-Stacking: E:W.67, E:W.67, E:W.67
FAD.20: 19 residues within 4Å:- Chain F: T.21, A.25, N.49, E.50, S.51, L.53, S.54, R.60, Y.63, Q.64, W.67, L.70, L.80, N.82, L.94, V.96, Y.109, L.110, G.111
19 PLIP interactions:19 interactions with chain F- Hydrophobic interactions: F:T.21, F:A.25, F:E.50, F:L.70, F:V.96, F:Y.109, F:Y.109
- Hydrogen bonds: F:S.51, F:S.51, F:S.54, F:S.54, F:R.60, F:N.82, F:N.82
- Water bridges: F:Q.64
- Salt bridges: F:R.60
- pi-Stacking: F:W.67, F:W.67, F:W.67
- 3 x EOH: ETHANOL(Non-functional Binders)
EOH.7: 1 residues within 4Å:- Chain B: H.13
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:H.13
EOH.14: 1 residues within 4Å:- Chain D: H.13
1 PLIP interactions:1 interactions with chain D- Hydrophobic interactions: D:H.13
EOH.21: 1 residues within 4Å:- Chain F: H.13
1 PLIP interactions:1 interactions with chain F- Hydrophobic interactions: F:H.13
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Key, J. et al., Structure of the redox sensor domain of Azotobacter vinelandii NifL at atomic resolution: signaling, dimerization, and mechanism. Biochemistry (2007)
- Release Date
- 2007-03-06
- Peptides
- Nitrogen fixation regulatory protein: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.04 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 6 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 3 x EOH: ETHANOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Key, J. et al., Structure of the redox sensor domain of Azotobacter vinelandii NifL at atomic resolution: signaling, dimerization, and mechanism. Biochemistry (2007)
- Release Date
- 2007-03-06
- Peptides
- Nitrogen fixation regulatory protein: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B