- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 6 x UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)
UPG.2: 17 residues within 4Å:- Chain A: K.102, H.103, T.142, K.144, Y.152, N.184, S.191, V.192, P.208, I.209, T.210, M.214, R.216, M.250, R.269, E.272
- Ligands: NAP.1
18 PLIP interactions:18 interactions with chain A- Hydrophobic interactions: A:V.192
- Hydrogen bonds: A:K.102, A:T.142, A:K.144, A:N.184, A:S.191, A:P.208, A:T.210, A:T.210, A:R.269, A:E.272
- Water bridges: A:R.216, A:R.216
- Salt bridges: A:K.144, A:K.144, A:R.216, A:R.269, A:R.269
UPG.4: 19 residues within 4Å:- Chain B: K.102, T.142, D.143, K.144, Y.152, N.184, S.191, V.192, F.196, P.208, I.209, T.210, M.214, R.216, M.250, I.266, R.269, E.272
- Ligands: NAP.3
16 PLIP interactions:16 interactions with chain B- Hydrogen bonds: B:K.102, B:T.142, B:T.142, B:K.144, B:N.184, B:V.192, B:P.208, B:T.210, B:T.210, B:R.216, B:E.272
- Salt bridges: B:K.144, B:K.144, B:R.269, B:R.269
- pi-Stacking: B:F.196
UPG.7: 17 residues within 4Å:- Chain C: K.102, H.103, T.142, K.144, Y.152, N.184, S.191, V.192, P.208, I.209, T.210, M.214, R.216, M.250, R.269, E.272
- Ligands: NAP.6
18 PLIP interactions:18 interactions with chain C- Hydrophobic interactions: C:V.192
- Hydrogen bonds: C:K.102, C:T.142, C:K.144, C:N.184, C:S.191, C:P.208, C:T.210, C:T.210, C:R.269, C:E.272
- Water bridges: C:R.216, C:R.216
- Salt bridges: C:K.144, C:K.144, C:R.216, C:R.269, C:R.269
UPG.9: 19 residues within 4Å:- Chain D: K.102, T.142, D.143, K.144, Y.152, N.184, S.191, V.192, F.196, P.208, I.209, T.210, M.214, R.216, M.250, I.266, R.269, E.272
- Ligands: NAP.8
16 PLIP interactions:16 interactions with chain D- Hydrogen bonds: D:K.102, D:T.142, D:T.142, D:K.144, D:N.184, D:V.192, D:P.208, D:T.210, D:T.210, D:R.216, D:E.272
- Salt bridges: D:K.144, D:K.144, D:R.269, D:R.269
- pi-Stacking: D:F.196
UPG.12: 17 residues within 4Å:- Chain E: K.102, H.103, T.142, K.144, Y.152, N.184, S.191, V.192, P.208, I.209, T.210, M.214, R.216, M.250, R.269, E.272
- Ligands: NAP.11
18 PLIP interactions:18 interactions with chain E- Hydrophobic interactions: E:V.192
- Hydrogen bonds: E:K.102, E:T.142, E:K.144, E:N.184, E:S.191, E:P.208, E:T.210, E:T.210, E:R.269, E:E.272
- Water bridges: E:R.216, E:R.216
- Salt bridges: E:K.144, E:K.144, E:R.216, E:R.269, E:R.269
UPG.14: 19 residues within 4Å:- Chain F: K.102, T.142, D.143, K.144, Y.152, N.184, S.191, V.192, F.196, P.208, I.209, T.210, M.214, R.216, M.250, I.266, R.269, E.272
- Ligands: NAP.13
16 PLIP interactions:16 interactions with chain F- Hydrogen bonds: F:K.102, F:T.142, F:T.142, F:K.144, F:N.184, F:V.192, F:P.208, F:T.210, F:T.210, F:R.216, F:E.272
- Salt bridges: F:K.144, F:K.144, F:R.269, F:R.269
- pi-Stacking: F:F.196
- 3 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.5: 9 residues within 4Å:- Chain B: S.123, I.126, N.127, L.162, S.165
- Chain C: P.111, L.112
- Chain D: R.84, Y.87
5 PLIP interactions:2 interactions with chain D, 2 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: D:R.84, D:Y.87, B:N.127, B:S.165, C:L.112
MES.10: 9 residues within 4Å:- Chain D: S.123, I.126, N.127, L.162, S.165
- Chain E: P.111, L.112
- Chain F: R.84, Y.87
5 PLIP interactions:2 interactions with chain D, 1 interactions with chain E, 2 interactions with chain F- Hydrogen bonds: D:N.127, D:S.165, E:L.112, F:R.84, F:Y.87
MES.15: 9 residues within 4Å:- Chain A: P.111, L.112
- Chain B: R.84, Y.87
- Chain F: S.123, I.126, N.127, L.162, S.165
5 PLIP interactions:2 interactions with chain F, 2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: F:N.127, F:S.165, B:R.84, B:Y.87, A:L.112
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ishiyama, N. et al., Structural Studies of FlaA1 from Helicobacter pylori Reveal the Mechanism for Inverting 4,6-Dehydratase Activity. J.Biol.Chem. (2006)
- Release Date
- 2006-05-09
- Peptides
- UDP-GlcNAc C6 dehydratase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 6 x UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)
- 3 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ishiyama, N. et al., Structural Studies of FlaA1 from Helicobacter pylori Reveal the Mechanism for Inverting 4,6-Dehydratase Activity. J.Biol.Chem. (2006)
- Release Date
- 2006-05-09
- Peptides
- UDP-GlcNAc C6 dehydratase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B