- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x GDU: GALACTOSE-URIDINE-5'-DIPHOSPHATE(Non-covalent)
- 6 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NAP.2: 26 residues within 4Å:- Chain A: G.28, T.30, G.31, S.32, F.33, S.54, R.55, D.56, K.59, G.77, D.78, V.79, A.98, A.99, A.100, K.102, T.117, L.140, S.141, Y.152, K.156, Y.182, G.183, V.185, S.188, R.189
35 PLIP interactions:1 interactions with chain B, 34 interactions with chain A- Water bridges: B:E.57, A:G.31, A:S.32, A:S.32, A:G.34, A:K.59, A:K.59, A:R.80, A:A.100, A:R.189, A:R.189
- Hydrophobic interactions: A:Y.182, A:V.185
- Hydrogen bonds: A:T.30, A:T.30, A:S.32, A:S.32, A:F.33, A:R.55, A:D.56, A:D.78, A:V.79, A:A.98, A:A.100, A:Y.152, A:K.156, A:V.185, A:S.188, A:S.188
- Salt bridges: A:R.55, A:K.59, A:K.102, A:K.102, A:R.189
- pi-Cation interactions: A:R.55
NAP.4: 28 residues within 4Å:- Chain B: G.28, T.30, G.31, S.32, F.33, S.54, R.55, D.56, K.59, G.77, D.78, V.79, A.98, A.99, A.100, K.102, T.117, L.140, S.141, Y.152, K.156, Y.182, G.183, N.184, V.185, S.188, R.189
- Ligands: GDU.3
29 PLIP interactions:28 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:Y.182, B:V.185
- Hydrogen bonds: B:T.30, B:T.30, B:S.32, B:S.32, B:F.33, B:R.55, B:R.55, B:D.56, B:D.78, B:V.79, B:A.98, B:A.100, B:K.156, B:V.185, B:S.188, B:S.188
- Water bridges: B:G.31, B:G.34, B:R.80, B:T.142, A:E.57
- Salt bridges: B:R.55, B:K.59, B:K.102, B:K.102, B:R.189
- pi-Cation interactions: B:R.55
NAP.7: 26 residues within 4Å:- Chain C: G.28, T.30, G.31, S.32, F.33, S.54, R.55, D.56, K.59, G.77, D.78, V.79, A.98, A.99, A.100, K.102, T.117, L.140, S.141, Y.152, K.156, Y.182, G.183, V.185, S.188, R.189
35 PLIP interactions:34 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: C:Y.182, C:V.185
- Hydrogen bonds: C:T.30, C:T.30, C:S.32, C:S.32, C:F.33, C:R.55, C:D.56, C:D.78, C:V.79, C:A.98, C:A.100, C:Y.152, C:K.156, C:V.185, C:S.188, C:S.188
- Water bridges: C:G.31, C:S.32, C:S.32, C:G.34, C:K.59, C:K.59, C:R.80, C:A.100, C:R.189, C:R.189, D:E.57
- Salt bridges: C:R.55, C:K.59, C:K.102, C:K.102, C:R.189
- pi-Cation interactions: C:R.55
NAP.9: 28 residues within 4Å:- Chain D: G.28, T.30, G.31, S.32, F.33, S.54, R.55, D.56, K.59, G.77, D.78, V.79, A.98, A.99, A.100, K.102, T.117, L.140, S.141, Y.152, K.156, Y.182, G.183, N.184, V.185, S.188, R.189
- Ligands: GDU.8
29 PLIP interactions:28 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:Y.182, D:V.185
- Hydrogen bonds: D:T.30, D:T.30, D:S.32, D:S.32, D:F.33, D:R.55, D:R.55, D:D.56, D:D.78, D:V.79, D:A.98, D:A.100, D:K.156, D:V.185, D:S.188, D:S.188
- Water bridges: D:G.31, D:G.34, D:R.80, D:T.142, C:E.57
- Salt bridges: D:R.55, D:K.59, D:K.102, D:K.102, D:R.189
- pi-Cation interactions: D:R.55
NAP.12: 26 residues within 4Å:- Chain E: G.28, T.30, G.31, S.32, F.33, S.54, R.55, D.56, K.59, G.77, D.78, V.79, A.98, A.99, A.100, K.102, T.117, L.140, S.141, Y.152, K.156, Y.182, G.183, V.185, S.188, R.189
35 PLIP interactions:34 interactions with chain E, 1 interactions with chain F- Hydrophobic interactions: E:Y.182, E:V.185
- Hydrogen bonds: E:T.30, E:T.30, E:S.32, E:S.32, E:F.33, E:R.55, E:D.56, E:D.78, E:V.79, E:A.98, E:A.100, E:Y.152, E:K.156, E:V.185, E:S.188, E:S.188
- Water bridges: E:G.31, E:S.32, E:S.32, E:G.34, E:K.59, E:K.59, E:R.80, E:A.100, E:R.189, E:R.189, F:E.57
- Salt bridges: E:R.55, E:K.59, E:K.102, E:K.102, E:R.189
- pi-Cation interactions: E:R.55
NAP.14: 28 residues within 4Å:- Chain F: G.28, T.30, G.31, S.32, F.33, S.54, R.55, D.56, K.59, G.77, D.78, V.79, A.98, A.99, A.100, K.102, T.117, L.140, S.141, Y.152, K.156, Y.182, G.183, N.184, V.185, S.188, R.189
- Ligands: GDU.13
29 PLIP interactions:28 interactions with chain F, 1 interactions with chain E- Hydrophobic interactions: F:Y.182, F:V.185
- Hydrogen bonds: F:T.30, F:T.30, F:S.32, F:S.32, F:F.33, F:R.55, F:R.55, F:D.56, F:D.78, F:V.79, F:A.98, F:A.100, F:K.156, F:V.185, F:S.188, F:S.188
- Water bridges: F:G.31, F:G.34, F:R.80, F:T.142, E:E.57
- Salt bridges: F:R.55, F:K.59, F:K.102, F:K.102, F:R.189
- pi-Cation interactions: F:R.55
- 3 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.5: 9 residues within 4Å:- Chain B: S.123, N.127, S.165
- Chain C: N.110, P.111, L.112
- Chain D: E.83, R.84, Y.87
8 PLIP interactions:2 interactions with chain B, 5 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: B:N.127, B:S.165, D:E.83, D:Y.87, C:L.112
- Water bridges: D:R.84, D:R.84
- Salt bridges: D:R.84
MES.10: 9 residues within 4Å:- Chain D: S.123, N.127, S.165
- Chain E: N.110, P.111, L.112
- Chain F: E.83, R.84, Y.87
8 PLIP interactions:5 interactions with chain F, 2 interactions with chain D, 1 interactions with chain E- Hydrogen bonds: F:E.83, F:Y.87, D:N.127, D:S.165, E:L.112
- Water bridges: F:R.84, F:R.84
- Salt bridges: F:R.84
MES.15: 9 residues within 4Å:- Chain A: N.110, P.111, L.112
- Chain B: E.83, R.84, Y.87
- Chain F: S.123, N.127, S.165
8 PLIP interactions:2 interactions with chain F, 1 interactions with chain A, 5 interactions with chain B- Hydrogen bonds: F:N.127, F:S.165, A:L.112, B:E.83, B:Y.87
- Water bridges: B:R.84, B:R.84
- Salt bridges: B:R.84
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ishiyama, N. et al., Structural Studies of FlaA1 from Helicobacter pylori Reveal the Mechanism for Inverting 4,6-Dehydratase Activity. J.Biol.Chem. (2006)
- Release Date
- 2006-05-09
- Peptides
- UDP-GlcNAc C6 dehydratase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x GDU: GALACTOSE-URIDINE-5'-DIPHOSPHATE(Non-covalent)
- 6 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 3 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ishiyama, N. et al., Structural Studies of FlaA1 from Helicobacter pylori Reveal the Mechanism for Inverting 4,6-Dehydratase Activity. J.Biol.Chem. (2006)
- Release Date
- 2006-05-09
- Peptides
- UDP-GlcNAc C6 dehydratase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B