SMTL ID : 2gnn.1 (2 other biounits)

Crystal Structure of the Orf Virus NZ2 Variant of VEGF-E

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 1 residues within 4Å: Chain A: R.103 Ligand excluded by PLIP

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain A: K.97 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.97

2 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.3: 3 residues within 4Å: Chain A: L.62, D.99, C.100 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.62 Hydrogen bonds: A:D.99, A:C.100, A:C.100 BEN.10: 5 residues within 4Å: Chain B: S.40, S.80, G.81, S.82, G.83 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.81

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.4: 3 residues within 4Å: Chain A: D.59, E.60, S.61 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.60, A:S.61

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 2 residues within 4Å: Chain A: K.18, K.23 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.18, A:K.18, A:K.23 GOL.6: 4 residues within 4Å: Chain A: G.12, W.13, S.14, E.15 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.12, A:S.14, A:E.15 GOL.7: 2 residues within 4Å: Chain A: E.60 Chain B: R.42 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.42, B:R.42 GOL.8: 6 residues within 4Å: Chain A: N.9, K.11 Chain B: M.51, V.72, E.94, K.96 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.9, A:N.9, A:K.11, A:K.11 Water bridges: B:H.95 GOL.11: 5 residues within 4Å: Chain A: E.75 Chain B: G.12, W.13, S.14, E.15 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:W.13, B:E.15, A:E.75 Water bridges: B:G.12 GOL.12: 3 residues within 4Å: Chain B: S.80, S.82, S.84 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.80, B:S.80, B:S.82, B:S.82 Water bridges: B:N.85 GOL.13: 3 residues within 4Å: Chain B: E.69, V.93, H.95 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.95

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.9: 2 residues within 4Å: Chain B: E.69, N.71 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pieren, M. et al., Crystal structure of the Orf virus NZ2 variant of vascular endothelial growth factor-E. Implications for receptor specificity. J.Biol.Chem. (2006)

Release Date

2006-05-09

Peptides

Vascular endothelial growth factor homolog: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Vascular endothelial growth factor homolog

Related Entries With Identical Sequence