SMTL ID : 2gnn.2 (2 other biounits)

Crystal Structure of the Orf Virus NZ2 Variant of VEGF-E

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: E.63, R.103 Ligand excluded by PLIP CL.2: 2 residues within 4Å: Chain A: W.13, S.14 Ligand excluded by PLIP

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 1 residues within 4Å: Chain A: K.97 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.97

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.4: 3 residues within 4Å: Chain A: D.59, E.60, S.61 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.60, A:S.61 Water bridges: A:S.61

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain A: R.52, E.69, V.93, H.95 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.69, A:E.69

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 2 residues within 4Å: Chain B: E.69, N.71 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.71, B:N.71

1 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.7: 2 residues within 4Å: Chain A: E.60 Chain B: R.42 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Water bridges: B:N.44 Hydrophobic interactions: A:E.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pieren, M. et al., Crystal structure of the Orf virus NZ2 variant of vascular endothelial growth factor-E. Implications for receptor specificity. J.Biol.Chem. (2006)

Release Date

2006-05-09

Peptides

Vascular endothelial growth factor homolog: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Vascular endothelial growth factor homolog

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