- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 3 x BEN: BENZAMIDINE(Non-functional Binders)
- 2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
TRS.4: 6 residues within 4Å:- Chain A: D.59, E.60, S.61
- Chain D: S.40, Q.41, R.42
8 PLIP interactions:2 interactions with chain A, 6 interactions with chain D- Hydrogen bonds: A:E.60, A:S.61, D:S.40, D:Q.41, D:Q.41
- Water bridges: D:S.40, D:S.40, D:R.42
TRS.17: 6 residues within 4Å:- Chain B: S.40, Q.41, R.42
- Chain C: D.59, E.60, S.61
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: B:S.40, B:Q.41, B:R.42, C:E.60, C:S.61
- Water bridges: B:S.40
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 2 residues within 4Å:- Chain A: K.18, K.23
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.18, A:K.18, A:K.23
GOL.6: 4 residues within 4Å:- Chain A: G.12, W.13, S.14, E.15
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.12, A:S.14, A:E.15
GOL.7: 3 residues within 4Å:- Chain A: E.60
- Chain B: R.42
- Ligands: BEN.20
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.42, B:R.42
GOL.8: 6 residues within 4Å:- Chain A: N.9, K.11
- Chain B: M.51, V.72, E.94, K.96
5 PLIP interactions:1 interactions with chain B, 4 interactions with chain A- Water bridges: B:H.95
- Hydrogen bonds: A:N.9, A:N.9, A:K.11, A:K.11
GOL.11: 5 residues within 4Å:- Chain A: E.75
- Chain B: G.12, W.13, S.14, E.15
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:W.13, B:E.15, A:E.75
- Water bridges: B:G.12
GOL.12: 5 residues within 4Å:- Chain B: S.80, S.82, S.84
- Chain C: E.21, C.22
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:S.80, B:S.80, B:S.82, B:S.82
- Water bridges: B:N.85, C:E.21
GOL.13: 3 residues within 4Å:- Chain B: E.69, V.93, H.95
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:H.95
GOL.18: 4 residues within 4Å:- Chain C: R.52, E.69, V.93, H.95
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:E.69, C:E.69
- 2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pieren, M. et al., Crystal structure of the Orf virus NZ2 variant of vascular endothelial growth factor-E. Implications for receptor specificity. J.Biol.Chem. (2006)
- Release Date
- 2006-05-09
- Peptides
- Vascular endothelial growth factor homolog: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 3 x BEN: BENZAMIDINE(Non-functional Binders)
- 2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pieren, M. et al., Crystal structure of the Orf virus NZ2 variant of vascular endothelial growth factor-E. Implications for receptor specificity. J.Biol.Chem. (2006)
- Release Date
- 2006-05-09
- Peptides
- Vascular endothelial growth factor homolog: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D