SMTL ID : 2gve.1

Time-of-Flight Neutron Diffraction Structure of D-Xylose Isomerase

Coordinates

PDB Format

Method

NEUTRON DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

8 x CO: COBALT (II) ION(Non-covalent)

CO.1: 5 residues within 4Å: Chain A: E.217, H.220, N.247, D.255, D.257 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.217, A:H.220, A:D.255, A:D.257, H2O.1, H2O.1 CO.2: 5 residues within 4Å: Chain A: E.181, E.217, H.220, D.245, D.287 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.181, A:E.217, A:D.245, A:D.287, H2O.5, H2O.5 CO.3: 5 residues within 4Å: Chain B: E.217, H.220, N.247, D.255, D.257 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.217, B:H.220, B:D.255, B:D.257, H2O.21, H2O.21 CO.4: 5 residues within 4Å: Chain B: E.181, E.217, H.220, D.245, D.287 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.181, B:E.217, B:D.245, B:D.287, H2O.24, H2O.24 CO.5: 5 residues within 4Å: Chain C: E.217, H.220, N.247, D.255, D.257 6 PLIP interactions: 4 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.217, C:H.220, C:D.255, C:D.257, H2O.40, H2O.40 CO.6: 5 residues within 4Å: Chain C: E.181, E.217, H.220, D.245, D.287 6 PLIP interactions: 4 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.181, C:E.217, C:D.245, C:D.287, H2O.44, H2O.44 CO.7: 5 residues within 4Å: Chain D: E.217, H.220, N.247, D.255, D.257 6 PLIP interactions: 4 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:E.217, D:H.220, D:D.255, D:D.257, H2O.60, H2O.60 CO.8: 5 residues within 4Å: Chain D: E.181, E.217, H.220, D.245, D.287 6 PLIP interactions: 4 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:E.181, D:E.217, D:D.245, D:D.287, H2O.64, H2O.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Katz, A.K. et al., Locating active-site hydrogen atoms in D-xylose isomerase: Time-of-flight neutron diffraction. Proc.Natl.Acad.Sci.Usa (2006)

Release Date

2006-05-16

Peptides

Xylose isomerase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Xylose isomerase

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