SMTL ID : 4a8l.1

Protein crystallization and microgravity: glucose isomerase crystals grown during the PCDF-PROTEIN mission

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

homo-tetramer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: H.54, F.94, W.137, E.181, D.245, D.287 Ligands: CO.2 3 PLIP interactions: 3 interactions with chain A Water bridges: A:T.90, A:W.137, A:N.215 EDO.4: 7 residues within 4Å: Chain B: H.54, F.94, W.137, E.181, D.245, D.287 Ligands: CO.5 3 PLIP interactions: 3 interactions with chain B Water bridges: B:T.90, B:T.91, B:N.215 EDO.7: 7 residues within 4Å: Chain C: H.54, F.94, W.137, E.181, D.245, D.287 Ligands: CO.8 3 PLIP interactions: 3 interactions with chain C Water bridges: C:T.90, C:T.91, C:N.215 EDO.10: 7 residues within 4Å: Chain D: H.54, F.94, W.137, E.181, D.245, D.287 Ligands: CO.11 3 PLIP interactions: 3 interactions with chain D Water bridges: D:T.90, D:W.137, D:N.215

8 x CO: COBALT (II) ION(Non-covalent)

CO.2: 5 residues within 4Å: Chain A: E.181, E.217, D.245, D.287 Ligands: EDO.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.181, A:E.217, A:D.245, A:D.287, H2O.11 CO.3: 5 residues within 4Å: Chain A: E.217, H.220, N.247, D.255, D.257 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.217, A:H.220, A:D.255, A:D.257, H2O.12 CO.5: 5 residues within 4Å: Chain B: E.181, E.217, D.245, D.287 Ligands: EDO.4 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.181, B:E.217, B:D.245, B:D.287, H2O.30 CO.6: 5 residues within 4Å: Chain B: E.217, H.220, N.247, D.255, D.257 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.217, B:H.220, B:D.255, B:D.257, H2O.31 CO.8: 5 residues within 4Å: Chain C: E.181, E.217, D.245, D.287 Ligands: EDO.7 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.181, C:E.217, C:D.245, C:D.287, H2O.49 CO.9: 5 residues within 4Å: Chain C: E.217, H.220, N.247, D.255, D.257 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.217, C:H.220, C:D.255, C:D.257, H2O.50 CO.11: 5 residues within 4Å: Chain D: E.181, E.217, D.245, D.287 Ligands: EDO.10 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.181, D:E.217, D:D.245, D:D.287, H2O.67 CO.12: 5 residues within 4Å: Chain D: E.217, H.220, N.247, D.255, D.257 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.217, D:H.220, D:D.255, D:D.257, H2O.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Decanniere, K. et al., Protein Crystallization and Microgravity: Glucose Isomerase Crystals Grown During the Pcdf-Protein Mission. To be Published

Release Date

2011-11-30

Peptides

XYLOSE ISOMERASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

XYLOSE ISOMERASE

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