- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 22 x MN: MANGANESE (II) ION(Non-covalent)
- 8 x GLC: alpha-D-glucopyranose(Non-covalent)
GLC.7: 15 residues within 4Å:- Chain A: W.16, H.54, T.90, F.94, V.135, W.137, E.181, E.217, H.220, D.245, D.287
- Chain D: F.26
- Ligands: MN.1, MN.2, FRU.10
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:T.90, A:T.90
- Water bridges: A:W.16, A:W.137, A:N.215
- Salt bridges: A:H.54
GLC.8: 5 residues within 4Å:- Chain A: D.150, R.152, D.153, D.156
- Ligands: MN.4
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.152, A:D.156, A:D.156
- Water bridges: A:R.152, A:R.152
- Salt bridges: A:R.152
GLC.16: 15 residues within 4Å:- Chain B: W.16, H.54, T.90, F.94, V.135, W.137, E.181, E.217, H.220, D.245, D.287
- Chain C: F.26
- Ligands: MN.11, MN.12, GLC.17
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:H.54, B:E.181, B:E.181
- Water bridges: B:W.137, B:N.215, B:D.245, B:D.255, B:D.287
- Salt bridges: B:H.54
GLC.17: 8 residues within 4Å:- Chain B: W.16, D.57, F.94, T.95, K.289
- Chain C: P.25, F.26
- Ligands: GLC.16
7 PLIP interactions:6 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:N.92, B:T.95, B:K.289, C:P.25
- Water bridges: B:D.57, B:T.95
- Salt bridges: B:H.54
GLC.26: 15 residues within 4Å:- Chain B: F.26
- Chain C: W.16, H.54, T.90, F.94, V.135, W.137, E.181, E.217, H.220, D.245, D.287
- Ligands: MN.20, MN.21, FRU.29
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:T.90, C:T.90
- Water bridges: C:W.16, C:W.137, C:N.215
- Salt bridges: C:H.54
GLC.27: 5 residues within 4Å:- Chain C: D.150, R.152, D.153, D.156
- Ligands: MN.23
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:R.152, C:D.156, C:D.156
- Water bridges: C:R.152, C:R.152
- Salt bridges: C:R.152
GLC.35: 15 residues within 4Å:- Chain A: F.26
- Chain D: W.16, H.54, T.90, F.94, V.135, W.137, E.181, E.217, H.220, D.245, D.287
- Ligands: MN.30, MN.31, GLC.36
9 PLIP interactions:9 interactions with chain D- Hydrogen bonds: D:H.54, D:E.181, D:E.181
- Water bridges: D:W.137, D:N.215, D:D.245, D:D.255, D:D.287
- Salt bridges: D:H.54
GLC.36: 8 residues within 4Å:- Chain A: P.25, F.26
- Chain D: W.16, D.57, F.94, T.95, K.289
- Ligands: GLC.35
7 PLIP interactions:1 interactions with chain A, 6 interactions with chain D- Hydrogen bonds: A:P.25, D:N.92, D:T.95, D:K.289
- Water bridges: D:D.57, D:T.95
- Salt bridges: D:H.54
- 8 x FRU: beta-D-fructofuranose(Non-covalent)
FRU.9: 10 residues within 4Å:- Chain A: W.20, D.24, P.25, Y.254, D.255, Q.256, K.289, P.291
- Chain D: P.25, P.187
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Q.256, A:Q.256
- Water bridges: A:Y.254, A:D.255, A:K.289
FRU.10: 12 residues within 4Å:- Chain A: W.16, R.23, H.54, D.57, N.92, F.94, T.95, K.289
- Chain D: P.25, F.26, G.27
- Ligands: GLC.7
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:R.23, A:H.54, A:N.92, A:T.95, A:K.289, A:K.289
- Water bridges: A:W.16, A:K.289
FRU.18: 10 residues within 4Å:- Chain B: W.20, D.24, P.25, Y.254, D.255, Q.256, K.289, P.291
- Chain C: P.25, P.187
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:D.24, B:D.24
- Water bridges: B:D.255, B:D.255, B:K.289
FRU.19: 3 residues within 4Å:- Chain B: S.64, S.66, E.67
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:S.64
FRU.28: 10 residues within 4Å:- Chain B: P.25, P.187
- Chain C: W.20, D.24, P.25, Y.254, D.255, Q.256, K.289, P.291
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:Q.256, C:Q.256
- Water bridges: C:Y.254, C:D.255, C:K.289
FRU.29: 12 residues within 4Å:- Chain B: P.25, F.26, G.27
- Chain C: W.16, R.23, H.54, D.57, N.92, F.94, T.95, K.289
- Ligands: GLC.26
8 PLIP interactions:8 interactions with chain C- Hydrogen bonds: C:R.23, C:H.54, C:N.92, C:T.95, C:K.289, C:K.289
- Water bridges: C:W.16, C:K.289
FRU.37: 10 residues within 4Å:- Chain A: P.25, P.187
- Chain D: W.20, D.24, P.25, Y.254, D.255, Q.256, K.289, P.291
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:D.24, D:D.24
- Water bridges: D:D.255, D:D.255, D:K.289
FRU.38: 3 residues within 4Å:- Chain D: S.64, S.66, E.67
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:S.64
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lobley, C.M. et al., A generic protocol for protein crystal dehydration using the HC1b humidity controller. Acta Crystallogr D Struct Biol (2016)
- Release Date
- 2016-03-23
- Peptides
- Xylose isomerase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
SMTL ID : 4zbc.1
A dehydrated form of glucose isomerase collected at 100K.
Xylose isomerase
Toggle Identical (ABCD)Related Entries With Identical Sequence
1mnz.1 | 2glk.1 | 2gub.1 | 2gve.1 | 3cwh.1 | 3kbj.1 | 3kbm.1 | 3kbn.1 | 3kbs.1 | 3kbv.1 | 3kbw.1 | 3kcj.1 | 3kcl.1 | 3kco.1 | 3qys.1 | 3qza.1 | 3u3h.1 | 4a8i.1 | 4a8l.1 | 4a8n.1 | 4a8r.1 | 4duo.1 | 4dvo.1 | 4e3v.1 | 4qdp.1 | 4qdw.1 | 4qe1.1 | 4qe4.1 | 4qe5.1 | 4qee.1 more...less...4qeh.1 | 4us6.1 | 4w4q.1 | 4zb2.1 | 4zb5.1 | 5i7g.1 | 5vr0.1 | 5y4i.1 | 5zyc.1 | 5zyd.1 | 5zye.1 | 6irk.1 | 6kca.1 | 6kcc.1 | 6kd2.1 | 6ll2.1 | 6qnc.1 | 6qnd.1 | 6qnh.1 | 6qni.1 | 6qnj.1 | 6quf.1 | 6quk.1 | 6rnd.1 | 6rnf.1 | 6vrs.1 | 6ybo.1 | 6ybr.1 | 7bvl.1 | 7bvn.1 | 7cjo.1 | 7cjp.1 | 7ck0.1 | 7cvk.1 | 7cvm.1 | 7dfj.1 | 7dfk.1 | 7e03.1 | 7njg.1 | 8aw8.1 | 8aw9.1 | 8awb.1 | 8awc.1 | 8awd.1 | 8awe.1 | 8awf.1 | 8aws.1 | 8awu.1 | 8awv.1 | 8awx.1 | 8awy.1