SMTL ID : 2h46.2 (1 other biounit)

Native domain-swapped dimer crystal structure of the Grb2 SH2 domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-octamer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: R.15, R.34, S.36, E.37, S.38 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.34, A:R.34, A:S.36, A:E.37, A:S.38 Water bridges: A:R.15, A:E.37 GOL.2: 5 residues within 4Å: Chain B: R.15, R.34, S.36, E.37, S.38 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:R.34, B:R.34, B:S.36, B:E.37, B:S.38 Water bridges: B:R.15, B:E.37 GOL.3: 5 residues within 4Å: Chain C: R.15, R.34, S.36, E.37, S.38 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:R.34, C:R.34, C:S.36, C:E.37, C:S.38 Water bridges: C:R.15, C:E.37 GOL.4: 5 residues within 4Å: Chain D: R.15, R.34, S.36, E.37, S.38 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:R.34, D:R.34, D:S.36, D:E.37, D:S.38 Water bridges: D:R.15, D:E.37 GOL.5: 5 residues within 4Å: Chain E: R.15, R.34, S.36, E.37, S.38 7 PLIP interactions: 7 interactions with chain E Hydrogen bonds: E:R.34, E:R.34, E:S.36, E:E.37, E:S.38 Water bridges: E:R.15, E:E.37 GOL.6: 5 residues within 4Å: Chain F: R.15, R.34, S.36, E.37, S.38 7 PLIP interactions: 7 interactions with chain F Hydrogen bonds: F:R.34, F:R.34, F:S.36, F:E.37, F:S.38 Water bridges: F:R.15, F:E.37 GOL.7: 5 residues within 4Å: Chain G: R.15, R.34, S.36, E.37, S.38 7 PLIP interactions: 7 interactions with chain G Hydrogen bonds: G:R.34, G:R.34, G:S.36, G:E.37, G:S.38 Water bridges: G:R.15, G:E.37 GOL.8: 5 residues within 4Å: Chain H: R.15, R.34, S.36, E.37, S.38 7 PLIP interactions: 7 interactions with chain H Hydrogen bonds: H:R.34, H:R.34, H:S.36, H:E.37, H:S.38 Water bridges: H:R.15, H:E.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Benfield, A.P. et al., Structural and energetic aspects of Grb2-SH2 domain-swapping. Arch.Biochem.Biophys. (2007)

Release Date

2006-06-06

Peptides

Growth Receptor Binding Protein 2: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
E

C
E

D
E

E
E

F
E

G
E

H
E

Growth Receptor Binding Protein 2

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