SMTL ID : 2huw.2 (1 other biounit)

X-ray crystal structure of the Grb2 SH2 domain complexed to a constrained and cyclopropane-derived ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: P.5, H.6, P.7, W.8, R.84, D.98 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.98, A:D.98 Water bridges: A:N.77, A:R.84, A:R.84 Salt bridges: A:H.6, A:R.84

1 x YVN: N-({(1R,2R,3S)-2-(methylcarbamoyl)-3-[4-(phosphonooxy)phenyl]cyclopropyl}carbonyl)-L-valyl-L-aspartamide(Non-covalent)

YVN.2: 13 residues within 4Å: Chain A: R.15, R.34, S.36, E.37, S.38, S.44, Q.54, H.55, F.56, K.57, L.59, L.68, W.69 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:Q.54, A:F.56, A:F.56, A:K.57, A:W.69, A:W.69 Hydrogen bonds: A:R.15, A:R.15, A:E.37, A:S.38, A:S.44, A:H.55, A:K.57, A:K.57 Water bridges: A:S.36, A:E.37, A:E.37, A:H.55 Salt bridges: A:R.15, A:R.34 pi-Cation interactions: A:R.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Benfield, A.P. et al., Ligand Preorganization May Be Accompanied by Entropic Penalties in Protein-Ligand Interactions. Angew.Chem.Int.Ed.Engl. (2006)

Release Date

2006-08-15

Peptides

Growth factor receptor-bound protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Growth factor receptor-bound protein 2

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