SMTL ID : 2h6f.1

Protein Farnesyltransferase Complexed with a Farnesylated DDPTASACVLS Peptide Product at 1.5A Resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 12 residues within 4Å: Chain A: Y.241, G.282, Q.285, D.286 Chain B: A.230, R.231, Q.233, N.234, W.235, G.237, N.269, S.272 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.285, A:D.286, B:A.230, B:N.269, B:N.269, B:S.272, A:Y.241, A:G.282, A:Q.285, B:Q.233 Water bridges: A:D.286, A:D.286, B:W.235

5 x ACY: ACETIC ACID(Non-functional Binders)

ACY.2: 5 residues within 4Å: Chain A: K.164, Y.200, H.201 Ligands: ACY.3, FAR.8 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Water bridges: B:R.291, B:R.291 Salt bridges: A:K.164, A:H.201 ACY.3: 6 residues within 4Å: Chain A: Y.166, Y.200 Chain B: H.248, Y.251 Ligands: ACY.2, FAR.8 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Y.251 Salt bridges: B:H.248, A:H.201 ACY.4: 5 residues within 4Å: Chain A: W.169, H.170, R.173, Q.204 Chain B: E.198 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:E.198 Water bridges: B:V.199, A:H.170 Salt bridges: A:H.170, A:R.173 ACY.6: 6 residues within 4Å: Chain B: Y.81, Y.93, R.358, D.359, F.360 Ligands: ACY.7 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.81 Water bridges: B:R.358 Salt bridges: B:R.358 ACY.7: 6 residues within 4Å: Chain B: Y.81, L.89, T.90, Y.93, F.360 Ligands: ACY.6 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:T.90, B:Y.93 Hydrogen bonds: B:T.90

1 x ZN: ZINC ION(Non-covalent)

ZN.5: 6 residues within 4Å: Chain B: D.297, C.299, Y.361, H.362 Chain C: C.8 Ligands: FAR.8 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain C Metal complexes: B:D.297, B:D.297, B:C.299, B:H.362, C:C.8

1 x FAR: FARNESYL(Non-covalent)

FAR.8: 18 residues within 4Å: Chain A: Y.166 Chain B: W.102, R.202, Y.205, H.248, G.250, C.254, D.297, C.299, Y.300, W.303, Y.361 Chain C: C.8, V.9, L.10 Ligands: ACY.2, ACY.3, ZN.5 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:W.102, B:Y.205, B:W.303, C:L.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Terry, K.L. et al., Conversion of protein farnesyltransferase to a geranylgeranyltransferase. Biochemistry (2006)

Release Date

2006-08-29

Peptides

Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit: A
Protein farnesyltransferase beta subunit: B
farnesylated peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
P

Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit

Protein farnesyltransferase beta subunit

farnesylated peptide

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