SMTL ID : 2hb7.1

Crystal structure of VDR LBD in complex with 2alpha(3-hydroxy-1-propyl) calcitriol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x O1C: 2ALPHA-(3-HYDROXYPROPYL)-1ALPHA,25-DIHYDROXYVITAMIN D3(Non-covalent)

O1C.1: 24 residues within 4Å: Chain A: T.29, Y.30, D.31, Y.34, F.37, L.63, L.66, L.69, V.70, Y.72, S.73, I.107, R.110, S.111, S.114, W.122, C.124, Y.131, V.136, H.141, L.145, L.149, H.233, V.254 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:Y.30, A:Y.34, A:F.37, A:L.63, A:L.66, A:L.69, A:I.107, A:W.122, A:Y.131, A:V.136, A:L.145, A:L.149, A:V.254 Hydrogen bonds: A:T.29, A:Y.30, A:S.73, A:R.110, A:R.110, A:S.114, A:H.233 Water bridges: A:D.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hourai, S. et al., Probing a Water Channel near the A-Ring of Receptor-Bound 1alpha,25-Dihydroxyvitamin D3 with Selected 2alpha-Substituted Analogues. J.Med.Chem. (2006)

Release Date

2006-08-29

Peptides

Vitamin D3 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D3 receptor

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