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SMTL ID : 2hd4.1

Crystal structure of proteinase K inhibited by a lactoferrin octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys at 2.15 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x GLY- ASP- GLU- GLN- GLY- GLU- ASN- LYS: 8-mer Peptide from Lactotransferrin(Non-covalent)

GLY-ASP-GLU-GLN-GLY-GLU-ASN-LYS.1:

16 residues within 4Å:

Chain A: N.67, N.99, G.100, G.102, Y.104, I.107, S.132, L.133, G.134, G.135, G.136, G.160, N.161, N.162, S.224
Ligands: ACY.3

10 PLIP interactions:

10 interactions with chain A

Hydrogen bonds: A:N.67, A:S.132, A:G.134, A:G.134, A:G.136, A:N.161, A:N.161, A:N.162
Water bridges: A:G.134, A:G.134

1 x CA: CALCIUM ION(Non-covalent)

CA.2:

3 residues within 4Å:

Chain A: P.175, V.177, D.200

5 PLIP interactions:

3 interactions with chain A, 2 Ligand-Water interactions

Metal complexes: A:P.175, A:D.200, A:D.200, H₂O.10, H₂O.10

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.3:

7 residues within 4Å:

Chain A: H.69, N.161, S.221, G.222, S.224, M.225
Ligands: GLY-ASP-GLU-GLN-GLY-GLU-ASN-LYS.1

3 PLIP interactions:

3 interactions with chain A

Hydrogen bonds: A:S.221, A:S.224
Salt bridges: A:H.69

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Prem Kumar, R. et al., Crystal structure of proteinase K inhibited by a lactoferrin octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys at 2.15 A resolution. To be Published

Release Date

2006-07-04

Peptides

Proteinase K: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Proteinase K

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