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SMTL ID : 2hdn.7
(8 other biounits)
Trypsin-modified Elongation Factor Tu in complex with tetracycline at 2.8 Angstrom resolution
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.80 Å
Oligo State
hetero-2-2-mer
Ligands
2 x
MG
:
MAGNESIUM ION
(Non-covalent)
MG.1:
5 residues within 4Å:
Chain A:
T.18
Chain B:
C.23
,
P.24
Ligands:
GDP.2
,
TAC.3
3
PLIP interactions
:
1 interactions with chain A
,
2 Ligand-Water interactions
Metal complexes:
A:T.18
,
H
2
O.1
,
H
2
O.1
MG.4:
4 residues within 4Å:
Chain C:
T.18
Chain D:
C.23
Ligands:
GDP.5
,
TAC.6
3
PLIP interactions
:
1 interactions with chain C
,
2 Ligand-Water interactions
Metal complexes:
C:T.18
,
H
2
O.3
,
H
2
O.3
2 x
GDP
:
GUANOSINE-5'-DIPHOSPHATE
(Non-covalent)
GDP.2:
17 residues within 4Å:
Chain A:
H.12
,
V.13
,
D.14
,
H.15
,
G.16
,
K.17
,
T.18
,
T.19
Chain B:
N.77
,
K.78
,
D.80
,
M.81
,
S.115
,
A.116
,
L.117
Ligands:
MG.1
,
TAC.3
16
PLIP interactions
:
7 interactions with chain B
,
9 interactions with chain A
Hydrogen bonds:
B:N.77
,
B:K.78
,
B:K.78
,
B:S.115
,
B:A.116
,
B:L.117
,
A:D.14
,
A:D.14
,
A:H.15
,
A:G.16
,
A:K.17
,
A:T.18
,
A:T.19
,
A:T.19
Salt bridges:
B:D.80
,
A:K.17
GDP.5:
17 residues within 4Å:
Chain C:
H.12
,
V.13
,
D.14
,
H.15
,
G.16
,
K.17
,
T.18
,
T.19
Chain D:
N.77
,
K.78
,
D.80
,
M.81
,
S.115
,
A.116
,
L.117
Ligands:
MG.4
,
TAC.6
21
PLIP interactions
:
13 interactions with chain C
,
8 interactions with chain D
Hydrogen bonds:
C:D.14
,
C:D.14
,
C:H.15
,
C:G.16
,
C:K.17
,
C:T.18
,
C:T.18
,
C:T.19
,
C:T.19
,
D:N.77
,
D:K.78
,
D:K.78
,
D:S.115
,
D:A.116
,
D:L.117
Water bridges:
C:K.17
,
C:K.17
,
C:T.18
,
D:D.22
Salt bridges:
C:K.17
,
D:D.80
2 x
TAC
:
TETRACYCLINE
(Non-covalent)
TAC.3:
10 residues within 4Å:
Chain A:
T.18
Chain B:
T.6
,
S.7
,
D.22
,
C.23
,
P.24
Chain D:
S.7
Ligands:
MG.1
,
GDP.2
,
TAC.6
5
PLIP interactions
:
3 interactions with chain B
,
2 interactions with chain A
Hydrophobic interactions:
B:P.24
Hydrogen bonds:
B:D.22
,
A:T.18
,
A:T.18
Water bridges:
B:Y.29
TAC.6:
10 residues within 4Å:
Chain B:
S.7
Chain C:
T.18
Chain D:
T.6
,
S.7
,
D.22
,
C.23
,
P.24
Ligands:
TAC.3
,
MG.4
,
GDP.5
4
PLIP interactions
:
2 interactions with chain D
,
2 interactions with chain C
Hydrophobic interactions:
D:P.24
Hydrogen bonds:
D:D.22
Water bridges:
C:T.18
,
C:T.18
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Heffron, S.E. et al., Molecular complementarity between tetracycline and the GTPase active site of elongation factor Tu. Acta Crystallogr.,Sect.D (2006)
Release Date
2006-10-31
Peptides
Elongation factor EF-Tu:
A
C
Elongation factor EF-Tu:
B
D
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
C
C
B
B
D
D
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Related Entries With Identical Sequence
2hcj.1
|
2hdn.1
|
2hdn.2
|
2hdn.3
|
2hdn.4
|
2hdn.5
|
2hdn.6
|
2hdn.8
|
2hdn.9
|
5i4r.1
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