SMTL ID : 2hn9.1

Crystal structure of the uridine phosphorylase from Salmonella typhimurium in complex with thymine and phosphate ion at 2.12A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

homo-hexamer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 8 residues within 4Å: Chain A: G.26, R.30, I.69, R.91, I.92, G.93, T.94 Chain F: R.48 6 PLIP interactions: 1 interactions with chain F, 5 interactions with chain A Salt bridges: F:R.48, A:R.30, A:R.91 Hydrogen bonds: A:G.26, A:T.94, A:T.94

4 x TDR: THYMINE(Non-covalent)

TDR.2: 11 residues within 4Å: Chain A: T.94, T.95, G.96, F.162, Q.166, R.168, Y.195, E.196, M.197, I.220, V.221 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.162, A:I.220, A:V.221 Hydrogen bonds: A:T.94, A:Q.166, A:Q.166, A:R.168, A:R.168 TDR.3: 11 residues within 4Å: Chain B: T.94, T.95, G.96, F.162, Q.166, R.168, Y.195, E.196, M.197, I.220, V.221 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:F.162 Hydrogen bonds: B:G.96, B:Q.166, B:Q.166, B:R.168, B:R.168 TDR.4: 11 residues within 4Å: Chain D: T.94, T.95, G.96, F.162, Q.166, R.168, Y.195, E.196, M.197, I.220, V.221 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:Q.166, D:Q.166, D:R.168, D:R.168 TDR.5: 11 residues within 4Å: Chain F: T.94, T.95, G.96, F.162, Q.166, R.168, Y.195, E.196, M.197, I.220, V.221 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:Q.166, F:Q.166, F:R.168, F:R.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gabdoulkhakov, A.G. et al., Crystal structure of the uridine phosphorylase from Salmonella typhimurium in complex with thymine and phosphate ion at 2.12A resolution. To be Published

Release Date

2007-07-17

Peptides

Uridine phosphorylase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Uridine phosphorylase

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