SMTL ID : 2hvr.1 (1 other biounit)

Structure of T4 RNA Ligase 2 with Nicked 5'-Adenylated nucleic acid duplex containing a 3'-deoxyribonucleotide at the nick

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

monomer

Ligands

2 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)(Non-covalent)

BTB.1: 8 residues within 4Å: Chain A: T.11, G.12, G.13, G.14, G.15 Chain B: C.10, C.11, N.12 No protein-ligand interaction detected (PLIP) BTB.2: 3 residues within 4Å: Chain D: N.194, E.196, K.198 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:N.194, D:N.194, D:E.196, D:K.198 Water bridges: D:K.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nandakumar, J. et al., RNA Ligase Structures Reveal the Basis for RNA Specificity and Conformational Changes that Drive Ligation Forward. Cell(Cambridge,Mass.) (2006)

Release Date

2006-10-17

Peptides

T4 RNA ligase 2: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

D
A

T4 RNA ligase 2

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