SMTL ID : 2hvs.2 (1 other biounit)

Structure of T4 RNA Ligase 2 with Nicked 5'-Adenylated nucleic acid duplex containing a 2'-deoxyribonucleotide at the nick

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

BTB.1: 4 residues within 4Å: Chain A: G.12, G.13 Chain B: C.10, C.11 No protein-ligand interaction detected (PLIP)

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.2: 13 residues within 4Å: Chain C: C.1 Chain D: Y.6, L.9, E.35, K.36, I.37, N.41, E.100, F.120, A.151, V.208, K.226, K.228 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:Y.6, D:E.35, D:K.36, D:I.37, D:N.41, D:R.56 Salt bridges: D:K.36, D:K.226, D:K.228 pi-Stacking: D:F.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nandakumar, J. et al., RNA Ligase Structures Reveal the Basis for RNA Specificity and Conformational Changes that Drive Ligation Forward. Cell(Cambridge,Mass.) (2006)

Release Date

2006-10-17

Peptides

T4 RNA Ligase 2: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

D
B

T4 RNA Ligase 2

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