SMTL ID : 2iwv.2 (3 other biounits)

STRUCTURE OF THE MONOMERIC OUTER MEMBRANE PORIN OMPG IN THE OPEN AND CLOSED CONFORMATION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

9 x CA: CALCIUM ION(Non-functional Binders)(Non-covalent)

CA.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.4: 6 residues within 4Å: Chain A: N.19, V.20, G.22, D.26, M.27, G.29 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:V.20, A:G.22, A:D.26, A:M.27, H2O.13 CA.5: 4 residues within 4Å: Chain A: V.20, E.21, G.22, G.24 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.21, H2O.13 CA.6: 6 residues within 4Å: Chain A: N.220, D.222, D.226, E.228, E.230 Ligands: CA.7 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.222, A:D.226, A:D.226, A:E.228, A:E.230 CA.7: 4 residues within 4Å: Chain A: D.226, E.230, E.264 Ligands: CA.6 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.226, A:D.226, A:E.230, A:E.264, H2O.116 CA.8: 2 residues within 4Å: Chain A: H.262, G.265 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.262, H2O.46, H2O.114, H2O.118 CA.9: 4 residues within 4Å: Chain A: Y.23, D.28, D.57, S.59 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.28, A:D.57 CA.10: 3 residues within 4Å: Chain A: E.18, Y.51, E.53 No protein-ligand interaction detected (PLIP) CA.11: 2 residues within 4Å: Chain A: G.203, D.244 No protein-ligand interaction detected (PLIP)

43 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)(Non-functional Binders)

LDA.2: 2 residues within 4Å: Chain A: T.124 Ligands: LDA.38 Ligand excluded by PLIP LDA.3: 1 residues within 4Å: Ligands: LDA.38 Ligand excluded by PLIP LDA.13: 5 residues within 4Å: Chain A: R.45, H.75, K.114, D.118, W.132 Ligand excluded by PLIP LDA.14: 9 residues within 4Å: Chain A: E.16, R.169, T.208, Y.210, R.212, R.236, F.240, E.254, Y.272 Ligand excluded by PLIP LDA.15: 11 residues within 4Å: Chain A: L.239, Y.241, L.253, Y.255, F.257, H.271 Ligands: LDA.16, LDA.28, LDA.35, LDA.49, LDA.51 Ligand excluded by PLIP LDA.16: 5 residues within 4Å: Chain A: L.253, H.271 Ligands: LDA.15, LDA.35, LDA.53 Ligand excluded by PLIP LDA.17: 5 residues within 4Å: Chain A: I.194, G.214, L.215, D.233 Ligands: LDA.24 Ligand excluded by PLIP LDA.18: 8 residues within 4Å: Chain A: Y.97, T.145, G.146, Y.147, R.151, E.175, F.189, W.221 Ligand excluded by PLIP LDA.19: 5 residues within 4Å: Chain A: W.7, A.39, I.46 Ligands: LDA.30, LDA.44 Ligand excluded by PLIP LDA.20: 6 residues within 4Å: Chain A: W.7, N.41, W.44, V.74 Ligands: LDA.34, LDA.44 Ligand excluded by PLIP LDA.21: 8 residues within 4Å: Chain A: W.44, V.74, Y.76, F.78, L.88, T.89, G.90 Ligands: LDA.33 Ligand excluded by PLIP LDA.22: 13 residues within 4Å: Chain A: A.13, M.14, Y.15, P.33, S.34, V.35, Y.50, Q.52, V.275, G.276, V.277 Ligands: LDA.46, LDA.52 Ligand excluded by PLIP LDA.23: 6 residues within 4Å: Chain A: F.129, T.156, Y.172, L.174, Q.192 Ligands: LDA.29 Ligand excluded by PLIP LDA.24: 3 residues within 4Å: Chain A: L.215 Ligands: LDA.17, LDA.29 Ligand excluded by PLIP LDA.25: 4 residues within 4Å: Chain A: P.70, F.92, N.109 Ligands: LDA.47 Ligand excluded by PLIP LDA.26: 6 residues within 4Å: Chain A: L.72, V.74, G.91, F.92, Q.111, N.140 Ligand excluded by PLIP LDA.27: 5 residues within 4Å: Chain A: F.245, N.247, L.249, V.251 Ligands: LDA.42 Ligand excluded by PLIP LDA.28: 7 residues within 4Å: Chain A: L.202, H.205, Y.241 Ligands: LDA.15, LDA.35, LDA.45, LDA.48 Ligand excluded by PLIP LDA.29: 6 residues within 4Å: Chain A: V.170, Y.172, Q.192, L.215 Ligands: LDA.23, LDA.24 Ligand excluded by PLIP LDA.30: 6 residues within 4Å: Chain A: W.7, F.9, F.37, F.281 Ligands: LDA.19, LDA.32 Ligand excluded by PLIP LDA.31: 9 residues within 4Å: Chain A: L.168, A.196, Y.197, L.198, P.209, Y.210, T.211, W.259 Ligands: LDA.49 Ligand excluded by PLIP LDA.32: 5 residues within 4Å: Chain A: I.11, F.281 Ligands: LDA.30, LDA.36, LDA.40 Ligand excluded by PLIP LDA.33: 2 residues within 4Å: Ligands: LDA.21, LDA.34 Ligand excluded by PLIP LDA.34: 3 residues within 4Å: Chain A: W.113 Ligands: LDA.20, LDA.33 Ligand excluded by PLIP LDA.35: 3 residues within 4Å: Ligands: LDA.15, LDA.16, LDA.28 Ligand excluded by PLIP LDA.36: 7 residues within 4Å: Chain A: I.11, L.249, Y.279 Ligands: LDA.32, LDA.40, LDA.41, LDA.42 Ligand excluded by PLIP LDA.37: 4 residues within 4Å: Chain A: Y.50, D.68 Ligands: LDA.46, LDA.47 Ligand excluded by PLIP LDA.38: 4 residues within 4Å: Chain A: L.123, T.124 Ligands: LDA.2, LDA.3 Ligand excluded by PLIP LDA.39: 2 residues within 4Å: Chain A: N.163 Ligands: LDA.50 Ligand excluded by PLIP LDA.40: 6 residues within 4Å: Chain A: I.11, V.35 Ligands: LDA.32, LDA.36, LDA.41, LDA.46 Ligand excluded by PLIP LDA.41: 2 residues within 4Å: Ligands: LDA.36, LDA.40 Ligand excluded by PLIP LDA.42: 5 residues within 4Å: Chain A: N.247, L.249, Y.279 Ligands: LDA.27, LDA.36 Ligand excluded by PLIP LDA.43: 2 residues within 4Å: Chain A: E.25, W.221 Ligand excluded by PLIP LDA.44: 5 residues within 4Å: Chain A: N.5, W.7, N.41 Ligands: LDA.19, LDA.20 Ligand excluded by PLIP LDA.45: 6 residues within 4Å: Chain A: L.200, L.202, H.205, V.207 Ligands: LDA.28, LDA.48 Ligand excluded by PLIP LDA.46: 3 residues within 4Å: Ligands: LDA.22, LDA.37, LDA.40 Ligand excluded by PLIP LDA.47: 2 residues within 4Å: Ligands: LDA.25, LDA.37 Ligand excluded by PLIP LDA.48: 3 residues within 4Å: Chain A: L.202 Ligands: LDA.28, LDA.45 Ligand excluded by PLIP LDA.49: 7 residues within 4Å: Chain A: V.237, G.238, L.239, Y.255, W.259 Ligands: LDA.15, LDA.31 Ligand excluded by PLIP LDA.50: 5 residues within 4Å: Chain A: D.126, Y.160, T.161, F.162 Ligands: LDA.39 Ligand excluded by PLIP LDA.51: 8 residues within 4Å: Chain A: Y.15, Y.58, L.253, E.254, G.274, V.275 Ligands: LDA.15, LDA.53 Ligand excluded by PLIP LDA.52: 4 residues within 4Å: Chain A: Y.15, V.275 Ligands: LDA.22, LDA.53 Ligand excluded by PLIP LDA.53: 4 residues within 4Å: Chain A: L.253 Ligands: LDA.16, LDA.51, LDA.52 Ligand excluded by PLIP

1 x TAM: TRIS(HYDROXYETHYL)AMINOMETHANE(Non-covalent)

TAM.12: 4 residues within 4Å: Chain A: M.14, Y.36, S.252, N.278 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.36 Hydrogen bonds: A:S.252, A:S.252, A:N.278

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yildiz, O. et al., Structure of the Monomeric Outer-Membrane Porin Ompg in the Open and Closed Conformation. Embo J. (2006)

Release Date

2006-08-14

Peptides

OUTER MEMBRANE PROTEIN G: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Membrane

We predict this structure to be a membrane protein.
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OUTER MEMBRANE PROTEIN G

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