SMTL ID : 2iww.1 (1 other biounit)

Structure of the monomeric outer membrane porin OmpG in the open and closed conformation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.1: 5 residues within 4Å: Chain A: K.114, W.132, S.134, Y.136, E.153 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.114, A:S.134, A:Y.136, A:Y.136

1 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)

LDA.2: 3 residues within 4Å: Chain A: L.168, P.209, Y.210 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.168, A:P.209

8 x BOG: octyl beta-D-glucopyranoside(Non-covalent)(Non-functional Binders)

BOG.3: 5 residues within 4Å: Chain A: E.16, W.132, R.169, E.254, Y.272 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.132, A:R.169, A:R.169 Water bridges: A:T.208 BOG.4: 2 residues within 4Å: Chain A: W.7, F.9 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.9 BOG.5: 5 residues within 4Å: Chain A: A.13, Y.15, S.34, V.35, D.57 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.13, A:Y.15, A:V.35 Hydrogen bonds: A:Y.15, A:D.57, A:D.57 BOG.6: 3 residues within 4Å: Chain A: N.41, W.44, Y.76 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.76 BOG.7: 1 residues within 4Å: Chain A: W.113 No protein-ligand interaction detected (PLIP) BOG.8: 4 residues within 4Å: Chain A: V.170, Y.172, L.174, I.194 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.170, A:I.194 Hydrogen bonds: A:Y.172 Water bridges: A:Q.192, A:Q.192 BOG.9: 3 residues within 4Å: Chain A: L.127, L.158, V.170 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.127, A:L.158, A:L.158, A:V.170 BOG.10: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yildiz, O. et al., Structure of the Monomeric Outer-Membrane Porin Ompg in the Open and Closed Conformation. Embo J. (2006)

Release Date

2006-08-14

Peptides

OUTER MEMBRANE PROTEIN G: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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OUTER MEMBRANE PROTEIN G

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