SMTL ID : 2j65.1 (1 other biounit)

Structure of LpxC from Aquifex aeolicus in complex with UDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.74, T.179, H.226, D.230 Ligands: ZN.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.74, A:H.226, A:D.230, A:D.230, H2O.10 ZN.2: 5 residues within 4Å: Chain A: E.73, D.230, H.253 Ligands: ZN.1, MYR.6 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.73, A:H.253, H2O.10 ZN.3: 3 residues within 4Å: Chain A: H.58, H.188 Ligands: CL.5 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.58, A:H.188, H2O.10 ZN.4: 2 residues within 4Å: Chain A: G.2, E.120 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.120, A:E.120

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 4 residues within 4Å: Chain A: N.57, H.58, H.188 Ligands: ZN.3 Ligand excluded by PLIP

1 x MYR: MYRISTIC ACID(Non-covalent)

MYR.6: 15 residues within 4Å: Chain A: I.18, H.58, S.59, E.73, T.179, F.180, I.186, G.195, G.198, S.199, L.200, T.203, V.205, H.253 Ligands: ZN.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.18, A:I.186, A:L.200, A:T.203, A:V.205 Water bridges: A:K.227, A:K.227, A:D.230 Salt bridges: A:H.253

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.7: 10 residues within 4Å: Chain A: R.137, Y.151, G.153, E.154, F.155, K.156, E.185, K.227, R.250, G.251 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:R.137, A:R.137, A:Y.151, A:E.154, A:E.185, A:K.227 Water bridges: A:E.185 Salt bridges: A:K.156, A:R.250

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buetow, L. et al., The Nucleotide-Binding Site of Aquifex Aeolicus Lpxc. Acta Crystallogr.,Sect.F (2006)

Release Date

2006-11-08

Peptides

UDP-3-O-[3-HYDROXYMYRISTOYL] N-ACETYLGLUCOSAMINE DEACETYLASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-3-O-[3-HYDROXYMYRISTOYL] N-ACETYLGLUCOSAMINE DEACETYLASE

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