SMTL ID : 4u3d.1

LpxC from A.Aaeolicus in complex with 4-[[4-[2-[4-(morpholinomethyl)phenyl]ethynyl]phenoxy]methyl]tetrahydropyran-4-carbohydroxamic acid (compound 9)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.1: 5 residues within 4Å: Chain A: N.57, H.58, H.188 Ligands: ZN.3, CL.4 No protein-ligand interaction detected (PLIP)

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.74, H.226, D.230 Ligands: 3BX.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.74, A:H.226, A:D.230, A:D.230 ZN.3: 4 residues within 4Å: Chain A: H.58, H.188 Ligands: IMD.1, CL.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.58, A:H.188

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 6 residues within 4Å: Chain A: N.57, H.58, H.188, V.192 Ligands: IMD.1, ZN.3 Ligand excluded by PLIP

1 x 3BX: N-hydroxy-4-[(4-{[4-(morpholin-4-ylmethyl)phenyl]ethynyl}phenoxy)methyl]tetrahydro-2H-pyran-4-carboxamide(Non-covalent)

3BX.5: 20 residues within 4Å: Chain A: I.18, H.19, H.58, E.73, H.74, T.179, F.180, A.181, I.186, I.189, G.198, S.199, T.203, V.205, Y.212, H.226, K.227, D.230, H.253 Ligands: ZN.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.18, A:A.181, A:I.186, A:I.189, A:T.203, A:V.205 Hydrogen bonds: A:H.58, A:E.73, A:T.179, A:K.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murphy-Benenato, K.E. et al., Synthesis, Structure, and SAR of Tetrahydropyran-Based LpxC Inhibitors. Acs Med.Chem.Lett. (2014)

Release Date

2014-10-01

Peptides

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase

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