SMTL ID : 2mnz.1

NMR Structure of KDM5B PHD1 finger in complex with H3K4me0(1-10aa)

Coordinates

PDB Format Compare

Method

SOLUTION NMR

Oligo State

hetero-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.7, L.9, C.10, H.30, F.32, C.33 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.7, A:C.10, A:H.30, A:C.33 ZN.2: 6 residues within 4Å: Chain A: C.22, C.25, D.26, C.48, K.50, C.51 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.22, A:C.25, A:C.48, A:C.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., The PHD1 finger of KDM5B recognizes unmodified H3K4 during the demethylation of histone H3K4me2/3 by KDM5B. Protein Cell (2014)

Release Date

2014-08-06

Peptides

Lysine-specific demethylase 5B: A
H3K4me0: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lysine-specific demethylase 5B

H3K4me0

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