SMTL ID : 2o39.2 (1 other biounit)

Human Adenovirus type 11 knob in complex with domains SCR1 and SCR2 of CD46 (membrane cofactor protein, MCP)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 5 residues within 4Å: Chain B: A.79, N.80, Y.87, Q.88, H.90 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.4: 5 residues within 4Å: Chain D: A.79, N.80, Y.87, Q.88, H.90 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.7: 5 residues within 4Å: Chain F: A.79, N.80, Y.87, Q.88, H.90 No protein-ligand interaction detected (PLIP)

6 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain B: D.57, D.58 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.57, B:D.58 CA.3: 2 residues within 4Å: Chain B: D.70, A.76 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.70, B:A.76 CA.5: 2 residues within 4Å: Chain D: D.57, D.58 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.57, D:D.58 CA.6: 2 residues within 4Å: Chain D: D.70, A.76 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.70, D:A.76 CA.8: 2 residues within 4Å: Chain F: D.57, D.58 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:D.57, F:D.58 CA.9: 2 residues within 4Å: Chain F: D.70, A.76 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:D.70, F:A.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Persson, B.D. et al., Adenovirus type 11 binding alters the conformation of its receptor CD46. Nat.Struct.Mol.Biol. (2007)

Release Date

2007-01-09

Peptides

Fiber protein: ACE
Membrane cofactor protein: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
B

E
B

B
D

D
D

F
D

Fiber protein

Membrane cofactor protein

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