SMTL ID : 3inb.1

Structure of the measles virus hemagglutinin bound to the CD46 receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-2-2-mer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: F.47, S.48, N.49 Chain B: R.61 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.49, A:N.49, B:R.61 NAG.2: 6 residues within 4Å: Chain A: N.64, S.66, E.84, D.132, G.441, H.442 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.64, A:S.66, A:E.84, A:D.132, A:G.441, A:H.442 NAG.4: 1 residues within 4Å: Chain B: N.49 No protein-ligand interaction detected (PLIP) NAG.5: 4 residues within 4Å: Chain B: N.64, S.66, E.84, D.132 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:N.64 Hydrogen bonds: B:S.66, B:E.84, B:D.132 NAG.8: 3 residues within 4Å: Chain B: K.337 Chain C: N.80, Q.88 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.337 NAG.9: 3 residues within 4Å: Chain A: K.337 Chain D: N.80, Q.88 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.337, A:K.337

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: K.177 Chain B: R.110 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Y.124 Salt bridges: A:K.177, B:R.110 Water bridges: B:R.110, B:R.110 SO4.6: 3 residues within 4Å: Chain A: R.110 Chain B: K.177 Ligands: SO4.7 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Salt bridges: A:R.110, B:K.177 SO4.7: 5 residues within 4Å: Chain A: R.110 Chain B: Y.124, L.125, E.126 Ligands: SO4.6 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.126 Salt bridges: A:R.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Santiago, C. et al., Structure of the measles virus hemagglutinin bound to the CD46 receptor. Nat.Struct.Mol.Biol. (2010)

Release Date

2009-12-22

Peptides

Hemagglutinin glycoprotein: AB
Membrane cofactor protein: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Hemagglutinin glycoprotein

Membrane cofactor protein

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