SMTL ID : 2o51.1

Crystal structure of bovine C-lobe with fructose at 3.0 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-4)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 5 residues within 4Å: Chain A: L.132, N.135, T.326, A.327, N.330 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.330

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG.2: 6 residues within 4Å: Chain A: Q.23, S.24, G.25, N.27, H.272, L.276 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- MAN- BMA: beta-D-mannopyranose-(1-4)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-BMA.3: 7 residues within 4Å: Chain A: K.75, L.93, N.204, D.205, W.208, A.243, Q.244 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.77

1 x FRU: beta-D-fructofuranose(Non-covalent)

FRU.4: 7 residues within 4Å: Chain A: T.89, E.90, V.250, P.252, E.318, Y.319, L.320 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.89, A:L.320

1 x FE: FE (III) ION(Non-covalent)

FE.5: 5 residues within 4Å: Chain A: D.54, Y.92, Y.185, H.254 Ligands: CO3.6 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.54, A:Y.92, A:Y.185, A:H.254

1 x CO3: CARBONATE ION(Non-functional Binders)

CO3.6: 10 residues within 4Å: Chain A: D.54, Y.92, T.118, R.122, T.123, A.124, G.125, Y.185, H.254 Ligands: FE.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.118, A:R.122

2 x ZN: ZINC ION(Non-covalent)

ZN.7: 1 residues within 4Å: Chain A: E.318 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.318, A:E.318, H2O.7 ZN.8: 1 residues within 4Å: Chain A: H.247 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.247, H2O.7, H2O.7, H2O.7

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.9: 2 residues within 4Å: Chain A: R.229, R.237 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.229, A:R.229 Salt bridges: A:R.229, A:R.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mir, R. et al., Crystal structure of bovine C-lobe with fructose at 3.0 A resolution. To be Published

Release Date

2007-01-02

Peptides

Lactotransferrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lactotransferrin

Related Entries With Identical Sequence