SMTL ID : 2o7q.2 (1 other biounit)

Crystal Structure of the A. thaliana DHQ-dehydroshikimate-SDH-shikimate-NADP(H)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: W.69 Chain B: P.438 1 PLIP interactions: 1 interactions with chain B Water bridges: B:S.245 SO4.2: 4 residues within 4Å: Chain A: N.394, R.395, T.396, R.399 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.394, A:T.396, A:T.396, A:T.396 Salt bridges: A:R.395 SO4.3: 8 residues within 4Å: Chain A: T.292, I.293, P.294, H.295, K.296, E.297, G.373, G.374 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.296, A:E.297, A:E.297, A:G.374 Water bridges: A:A.375 SO4.6: 2 residues within 4Å: Chain A: P.438 Chain B: W.69 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.245 SO4.7: 4 residues within 4Å: Chain B: N.394, R.395, T.396, R.399 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.394, B:T.396, B:T.396, B:T.396 Salt bridges: B:R.395 SO4.8: 8 residues within 4Å: Chain B: T.292, I.293, P.294, H.295, K.296, E.297, G.373, G.374 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.296, B:E.297, B:E.297, B:E.297, B:G.374 Water bridges: B:A.375

4 x DHK: 3-DEHYDROSHIKIMATE(Covalent)(Non-covalent)

DHK.4: 11 residues within 4Å: Chain A: E.35, R.37, R.66, H.125, K.152, L.180, R.190, F.202, S.211, A.212, Q.215 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:K.152, A:F.202, A:F.202, A:A.212 Hydrogen bonds: A:E.35, A:R.37, A:R.66, A:S.211, A:S.211, A:Q.215 Water bridges: A:D.97 Salt bridges: A:K.152, A:R.190 DHK.5: 13 residues within 4Å: Chain A: I.239, S.247, S.249, S.290, C.291, T.292, K.296, N.317, D.334, Y.461, F.486, Q.489, Q.493 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.239, A:F.486 Hydrogen bonds: A:S.249, A:T.292, A:K.296, A:N.317, A:D.334, A:Q.489, A:Q.493 Water bridges: A:H.246, A:S.290, A:T.292 DHK.9: 11 residues within 4Å: Chain B: E.35, R.37, R.66, H.125, K.152, L.180, R.190, F.202, S.211, A.212, Q.215 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:K.152, B:F.202, B:F.202, B:A.212 Hydrogen bonds: B:E.35, B:R.37, B:R.66, B:K.152, B:S.211, B:S.211, B:Q.215 Water bridges: B:T.64 Salt bridges: B:K.152, B:R.190 DHK.10: 13 residues within 4Å: Chain B: I.239, S.247, S.249, S.290, C.291, T.292, K.296, N.317, D.334, Y.461, F.486, Q.489, Q.493 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:I.239, B:F.486 Hydrogen bonds: B:S.249, B:T.292, B:T.292, B:K.296, B:N.317, B:D.334, B:Y.461, B:Q.489, B:Q.493 Water bridges: B:H.246, B:S.290

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, S.A. et al., The DHQ-dehydroshikimate-SDH-shikimate-NADP(H) Complex: Insights into Metabolite Transfer in the Shikimate Pathway. Cryst.Growth Des. (2007)

Release Date

2007-11-20

Peptides

Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

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