SMTL ID : 2o7s.1 (1 other biounit)

Crystal Structure of the A. thaliana DHQ-dehydroshikimate-SDH-shikimate-NADP(H)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: W.69 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.69

2 x DHK: 3-DEHYDROSHIKIMATE(Covalent)(Non-covalent)

DHK.2: 11 residues within 4Å: Chain A: E.35, R.37, R.66, K.152, M.182, R.190, F.202, S.211, A.212, Q.215 Ligands: TLA.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:K.152, A:F.202, A:A.212 Hydrogen bonds: A:E.35, A:R.37, A:R.66, A:S.211, A:S.211, A:Q.215 Water bridges: A:D.97 Salt bridges: A:K.152, A:R.190 DHK.4: 14 residues within 4Å: Chain A: I.239, S.247, S.249, S.290, C.291, T.292, K.296, N.317, D.334, Y.461, F.486, Q.489, Q.493 Ligands: NAP.5 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.239 Hydrogen bonds: A:S.249, A:T.292, A:K.296, A:N.317, A:D.334, A:Q.489, A:Q.493 Water bridges: A:S.290, A:T.292, A:T.292

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.3: 11 residues within 4Å: Chain A: R.66, H.125, K.152, A.154, L.180, M.182, R.190, F.202, A.212, Q.215 Ligands: DHK.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:K.152, A:Q.215 Water bridges: A:R.37, A:R.66, A:R.66 Salt bridges: A:R.66, A:H.125, A:K.152, A:R.190

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.5: 27 residues within 4Å: Chain A: I.293, P.294, K.296, D.334, G.371, A.372, G.373, G.374, A.375, N.394, R.395, T.396, R.399, L.414, T.431, T.432, S.433, M.434, M.436, A.459, V.460, Y.461, G.482, M.485, F.486, Q.489 Ligands: DHK.4 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:A.375 Hydrogen bonds: A:A.372, A:G.373, A:G.374, A:A.375, A:N.394, A:N.394, A:R.395, A:R.395, A:T.396, A:T.396, A:S.433, A:A.459 Water bridges: A:H.246, A:T.292, A:G.376 Salt bridges: A:R.395, A:R.399 pi-Cation interactions: A:R.395, A:R.395

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, S.A. et al., The DHQ-dehydroshikimate-SDH-shikimate-NADP(H) Complex: Insights into Metabolite Transfer in the Shikimate Pathway. Cryst.Growth Des. (2007)

Release Date

2007-11-20

Peptides

Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

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