- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.78 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 4 x DHK: 3-DEHYDROSHIKIMATE(Covalent)(Non-covalent)
DHK.2: 11 residues within 4Å:- Chain A: E.35, R.37, R.66, K.152, M.182, R.190, F.202, S.211, A.212, Q.215
- Ligands: TLA.3
12 PLIP interactions:12 interactions with chain A- Hydrophobic interactions: A:K.152, A:F.202, A:A.212
- Hydrogen bonds: A:E.35, A:R.37, A:R.66, A:S.211, A:S.211, A:Q.215
- Water bridges: A:D.97
- Salt bridges: A:K.152, A:R.190
DHK.4: 14 residues within 4Å:- Chain A: I.239, S.247, S.249, S.290, C.291, T.292, K.296, N.317, D.334, Y.461, F.486, Q.489, Q.493
- Ligands: NAP.5
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:I.239
- Hydrogen bonds: A:S.249, A:T.292, A:K.296, A:N.317, A:D.334, A:Q.489, A:Q.493
- Water bridges: A:S.290, A:T.292, A:T.292
DHK.7: 11 residues within 4Å:- Chain B: E.35, R.37, R.66, K.152, M.182, R.190, F.202, S.211, A.212, Q.215
- Ligands: TLA.8
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:K.152, B:F.202, B:A.212
- Hydrogen bonds: B:E.35, B:R.37, B:R.66, B:S.211, B:S.211, B:Q.215
- Water bridges: B:T.64
- Salt bridges: B:K.152, B:R.190
DHK.9: 14 residues within 4Å:- Chain B: I.239, S.247, S.249, S.290, C.291, T.292, K.296, N.317, D.334, Y.461, F.486, Q.489, Q.493
- Ligands: NAP.10
13 PLIP interactions:13 interactions with chain B- Hydrophobic interactions: B:I.239
- Hydrogen bonds: B:S.249, B:T.292, B:T.292, B:K.296, B:N.317, B:D.334, B:Y.461, B:Q.489, B:Q.493
- Water bridges: B:H.246, B:S.290, B:T.292
- 2 x TLA: L(+)-TARTARIC ACID(Non-covalent)
TLA.3: 11 residues within 4Å:- Chain A: R.66, H.125, K.152, A.154, L.180, M.182, R.190, F.202, A.212, Q.215
- Ligands: DHK.2
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:K.152, A:Q.215
- Water bridges: A:R.37, A:R.66, A:R.66
- Salt bridges: A:R.66, A:H.125, A:K.152, A:R.190
TLA.8: 11 residues within 4Å:- Chain B: R.66, H.125, K.152, A.154, L.180, M.182, R.190, F.202, A.212, Q.215
- Ligands: DHK.7
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:K.152, B:Q.215
- Water bridges: B:R.37, B:R.66, B:R.66
- Salt bridges: B:R.66, B:H.125, B:K.152, B:R.190
- 2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NAP.5: 27 residues within 4Å:- Chain A: I.293, P.294, K.296, D.334, G.371, A.372, G.373, G.374, A.375, N.394, R.395, T.396, R.399, L.414, T.431, T.432, S.433, M.434, M.436, A.459, V.460, Y.461, G.482, M.485, F.486, Q.489
- Ligands: DHK.4
20 PLIP interactions:20 interactions with chain A- Hydrophobic interactions: A:A.375
- Hydrogen bonds: A:A.372, A:G.373, A:G.374, A:A.375, A:N.394, A:N.394, A:R.395, A:R.395, A:T.396, A:T.396, A:S.433, A:A.459
- Water bridges: A:H.246, A:T.292, A:G.376
- Salt bridges: A:R.395, A:R.399
- pi-Cation interactions: A:R.395, A:R.395
NAP.10: 27 residues within 4Å:- Chain B: I.293, P.294, K.296, D.334, G.371, A.372, G.373, G.374, A.375, N.394, R.395, T.396, R.399, L.414, T.431, T.432, S.433, M.434, M.436, A.459, V.460, Y.461, G.482, M.485, F.486, Q.489
- Ligands: DHK.9
20 PLIP interactions:20 interactions with chain B- Hydrophobic interactions: B:A.375
- Hydrogen bonds: B:A.372, B:G.373, B:G.374, B:A.375, B:N.394, B:N.394, B:R.395, B:R.395, B:T.396, B:T.396, B:S.433, B:A.459
- Water bridges: B:H.246, B:T.292, B:G.376
- Salt bridges: B:R.395, B:R.399
- pi-Cation interactions: B:R.395, B:R.395
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Singh, S.A. et al., The DHQ-dehydroshikimate-SDH-shikimate-NADP(H) Complex: Insights into Metabolite Transfer in the Shikimate Pathway. Cryst.Growth Des. (2007)
- Release Date
- 2007-11-20
- Peptides
- Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.78 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 4 x DHK: 3-DEHYDROSHIKIMATE(Covalent)(Non-covalent)
- 2 x TLA: L(+)-TARTARIC ACID(Non-covalent)
- 2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Singh, S.A. et al., The DHQ-dehydroshikimate-SDH-shikimate-NADP(H) Complex: Insights into Metabolite Transfer in the Shikimate Pathway. Cryst.Growth Des. (2007)
- Release Date
- 2007-11-20
- Peptides
- Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A