- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x ACT: ACETATE ION(Non-functional Binders)
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 4 residues within 4Å:- Chain A: D.126, D.130
- Ligands: MG.5, SUF.6
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.126, A:D.130, H2O.7, H2O.9
MG.4: 2 residues within 4Å:- Chain A: D.278
- Ligands: SUF.6
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.278, H2O.1, H2O.7, H2O.9
MG.5: 5 residues within 4Å:- Chain A: D.126, D.130, D.198
- Ligands: MG.3, SUF.6
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.126, A:D.130, H2O.1, H2O.7, H2O.9
MG.11: 4 residues within 4Å:- Chain B: D.126, D.130
- Ligands: MG.13, SUF.14
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.126, B:D.130, H2O.18, H2O.21
MG.12: 4 residues within 4Å:- Chain B: D.278, D.282, K.292
- Ligands: SUF.14
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.278, H2O.18, H2O.18, H2O.21
MG.13: 6 residues within 4Å:- Chain B: D.126, D.130, D.198, K.301
- Ligands: MG.11, SUF.14
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.126, B:D.130, H2O.18, H2O.18, H2O.21
- 2 x SUF: [2-(DIMETHYL-LAMBDA~4~-SULFANYL)-1-HYDROXYETHANE-1,1-DIYL]BIS(PHOSPHONIC ACID)(Non-covalent)
SUF.6: 14 residues within 4Å:- Chain A: L.123, D.126, D.130, R.135, K.235, T.236, Y.239, Q.275, D.278, K.292
- Ligands: ACT.1, MG.3, MG.4, MG.5
15 PLIP interactions:15 interactions with chain A- Hydrogen bonds: A:R.135, A:R.135, A:Q.275, A:D.278
- Water bridges: A:D.126, A:S.132, A:S.132, A:S.132, A:Q.195, A:K.235, A:K.235, A:T.236, A:D.282, A:K.292
- Salt bridges: A:D.126
SUF.14: 13 residues within 4Å:- Chain B: L.123, D.126, D.130, R.135, K.235, T.236, Y.239, Q.275, D.278, K.292
- Ligands: MG.11, MG.12, MG.13
17 PLIP interactions:17 interactions with chain B- Hydrogen bonds: B:D.126, B:R.135, B:R.135, B:Q.275, B:D.278
- Water bridges: B:D.126, B:D.130, B:D.130, B:S.132, B:S.132, B:D.198, B:K.235, B:K.235, B:D.282, B:K.292, B:K.292
- Salt bridges: B:D.126
- 3 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
BME.7: 4 residues within 4Å:- Chain A: D.179, C.182, R.183, R.186
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.179
BME.15: 3 residues within 4Å:- Chain B: C.182, R.183, R.186
No protein-ligand interaction detected (PLIP)BME.16: 1 residues within 4Å:- Chain B: C.370
No protein-ligand interaction detected (PLIP)- 1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, Y. et al., Bisphosphonates: Teaching Old Drugs with New Tricks. TO BE PUBLISHED
- Release Date
- 2007-10-02
- Peptides
- Farnesyl pyrophosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x ACT: ACETATE ION(Non-functional Binders)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 2 x SUF: [2-(DIMETHYL-LAMBDA~4~-SULFANYL)-1-HYDROXYETHANE-1,1-DIYL]BIS(PHOSPHONIC ACID)(Non-covalent)
- 3 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
- 1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, Y. et al., Bisphosphonates: Teaching Old Drugs with New Tricks. TO BE PUBLISHED
- Release Date
- 2007-10-02
- Peptides
- Farnesyl pyrophosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B