SMTL ID : 4rxd.2 (1 other biounit)

T. Brucei Farnesyl Diphosphate Synthase Complexed with Risedronate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

6 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.126, D.130 Ligands: MG.3, RIS.4 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.126, A:D.130, H2O.6, H2O.6 MG.2: 3 residues within 4Å: Chain A: D.278, D.282 Ligands: RIS.4 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.278, H2O.1, H2O.6, H2O.6 MG.3: 4 residues within 4Å: Chain A: D.126, D.130 Ligands: MG.1, RIS.4 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.126, A:D.130, H2O.1, H2O.6, H2O.6 MG.5: 4 residues within 4Å: Chain B: D.126, D.130 Ligands: MG.7, RIS.8 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.126, B:D.130, H2O.12, H2O.12 MG.6: 3 residues within 4Å: Chain B: D.278, D.282 Ligands: RIS.8 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.278, H2O.7, H2O.12, H2O.12 MG.7: 4 residues within 4Å: Chain B: D.126, D.130 Ligands: MG.5, RIS.8 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.126, B:D.130, H2O.8, H2O.12, H2O.12

2 x RIS: 1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID(Non-covalent)

RIS.4: 14 residues within 4Å: Chain A: L.123, D.126, D.130, R.135, Q.195, K.235, T.236, Y.239, Q.275, D.278, K.292 Ligands: MG.1, MG.2, MG.3 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.123, A:D.126 Hydrogen bonds: A:R.135, A:R.135, A:Y.239, A:Q.275, A:D.278, A:K.292 Water bridges: A:S.132, A:S.132, A:S.132, A:Q.195, A:K.235, A:K.235, A:T.236, A:D.278, A:D.282 RIS.8: 14 residues within 4Å: Chain B: L.123, D.126, D.130, R.135, Q.195, K.235, T.236, Y.239, Q.275, D.278, K.292 Ligands: MG.5, MG.6, MG.7 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:L.123, B:D.126 Hydrogen bonds: B:R.135, B:R.135, B:Q.275, B:D.278, B:K.292 Water bridges: B:D.130, B:D.130, B:S.132, B:S.132, B:Q.195, B:K.235, B:K.235, B:K.292

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y.L. et al., Farnesyl diphosphate synthase inhibitors with unique ligand-binding geometries. ACS Med Chem Lett (2015)

Release Date

2015-04-15

Peptides

Farnesyl pyrophosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

Farnesyl pyrophosphate synthase

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