- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x GP1: 2-amino-2-deoxy-1-O-phosphono-alpha-D-glucopyranose(Non-covalent)
- 3 x CO: COBALT (II) ION(Non-covalent)
CO.2: 11 residues within 4Å:- Chain A: D.406, Q.408
- Chain B: D.406, Q.408
- Chain C: D.406, Q.408
- Ligands: MG.3, CO.7, MG.8, CO.12, MG.13
6 PLIP interactions:1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: A:D.406, C:D.406, B:D.406, H2O.9, H2O.21, H2O.33
CO.7: 11 residues within 4Å:- Chain A: D.406, Q.408
- Chain B: D.406, Q.408
- Chain C: D.406, Q.408
- Ligands: CO.2, MG.3, MG.8, CO.12, MG.13
6 PLIP interactions:1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: A:D.406, C:D.406, B:D.406, H2O.9, H2O.21, H2O.33
CO.12: 11 residues within 4Å:- Chain A: D.406, Q.408
- Chain B: D.406, Q.408
- Chain C: D.406, Q.408
- Ligands: CO.2, MG.3, CO.7, MG.8, MG.13
6 PLIP interactions:1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: A:D.406, C:D.406, B:D.406, H2O.9, H2O.21, H2O.33
- 3 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 8 residues within 4Å:- Chain A: D.406
- Chain B: D.406
- Chain C: D.406
- Ligands: CO.2, CO.7, MG.8, CO.12, MG.13
6 PLIP interactions:1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: A:D.406, C:D.406, B:D.406, H2O.8, H2O.20, H2O.31
MG.8: 8 residues within 4Å:- Chain A: D.406
- Chain B: D.406
- Chain C: D.406
- Ligands: CO.2, MG.3, CO.7, CO.12, MG.13
6 PLIP interactions:1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: A:D.406, C:D.406, B:D.406, H2O.8, H2O.20, H2O.31
MG.13: 8 residues within 4Å:- Chain A: D.406
- Chain B: D.406
- Chain C: D.406
- Ligands: CO.2, MG.3, CO.7, MG.8, CO.12
6 PLIP interactions:1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: A:D.406, C:D.406, B:D.406, H2O.8, H2O.20, H2O.31
- 3 x COA: COENZYME A(Non-covalent)
COA.4: 14 residues within 4Å:- Chain A: F.402, G.404, S.405, A.422, A.423, I.438, R.440
- Chain B: K.446, W.449
- Chain C: T.384, C.385, N.386, Y.387
- Ligands: GP1.1
10 PLIP interactions:1 interactions with chain C, 2 interactions with chain B, 7 interactions with chain A- Hydrogen bonds: C:Y.387, A:S.405, A:A.423, A:R.440, A:R.440, A:R.440
- Hydrophobic interactions: B:W.449, A:A.422
- Salt bridges: B:K.446
- Water bridges: A:R.440
COA.9: 14 residues within 4Å:- Chain A: T.384, C.385, N.386, Y.387
- Chain B: F.402, G.404, S.405, A.422, A.423, I.438, R.440
- Chain C: K.446, W.449
- Ligands: GP1.6
10 PLIP interactions:2 interactions with chain C, 1 interactions with chain A, 7 interactions with chain B- Hydrophobic interactions: C:W.449, B:A.422
- Salt bridges: C:K.446
- Hydrogen bonds: A:Y.387, B:S.405, B:A.423, B:R.440, B:R.440, B:R.440
- Water bridges: B:R.440
COA.14: 14 residues within 4Å:- Chain A: K.446, W.449
- Chain B: T.384, C.385, N.386, Y.387
- Chain C: F.402, G.404, S.405, A.422, A.423, I.438, R.440
- Ligands: GP1.11
10 PLIP interactions:2 interactions with chain A, 1 interactions with chain B, 7 interactions with chain C- Hydrophobic interactions: A:W.449, C:A.422
- Salt bridges: A:K.446
- Hydrogen bonds: B:Y.387, C:S.405, C:A.423, C:R.440, C:R.440, C:R.440
- Water bridges: C:R.440
- 3 x UD1: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE(Non-covalent)
UD1.5: 20 residues within 4Å:- Chain A: L.11, A.12, A.13, G.14, Q.76, Q.79, L.80, G.81, T.82, A.85, Y.103, D.105, Y.139, G.140, E.154, N.169, T.170, Y.197, I.198, T.199
18 PLIP interactions:18 interactions with chain A- Hydrophobic interactions: A:Y.197
- Hydrogen bonds: A:A.13, A:G.14, A:Q.76, A:Q.76, A:G.81, A:Y.103, A:D.105, A:G.140, A:E.154, A:E.154, A:N.169
- Water bridges: A:K.25, A:G.104, A:G.104, A:E.154, A:Q.193, A:N.227
UD1.10: 20 residues within 4Å:- Chain B: L.11, A.12, A.13, G.14, Q.76, Q.79, L.80, G.81, T.82, A.85, Y.103, D.105, Y.139, G.140, E.154, N.169, T.170, Y.197, I.198, T.199
18 PLIP interactions:18 interactions with chain B- Hydrophobic interactions: B:Y.197
- Hydrogen bonds: B:A.13, B:G.14, B:Q.76, B:Q.76, B:G.81, B:Y.103, B:D.105, B:G.140, B:E.154, B:E.154, B:N.169
- Water bridges: B:K.25, B:G.104, B:G.104, B:E.154, B:Q.193, B:N.227
UD1.15: 20 residues within 4Å:- Chain C: L.11, A.12, A.13, G.14, Q.76, Q.79, L.80, G.81, T.82, A.85, Y.103, D.105, Y.139, G.140, E.154, N.169, T.170, Y.197, I.198, T.199
18 PLIP interactions:18 interactions with chain C- Hydrophobic interactions: C:Y.197
- Hydrogen bonds: C:A.13, C:G.14, C:Q.76, C:Q.76, C:G.81, C:Y.103, C:D.105, C:G.140, C:E.154, C:E.154, C:N.169
- Water bridges: C:K.25, C:G.104, C:G.104, C:E.154, C:Q.193, C:N.227
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Olsen, L.R. et al., Structure of the E. coli bifunctional GlmU acetyltransferase active site with substrates and products. Protein Sci. (2007)
- Release Date
- 2007-06-19
- Peptides
- Bifunctional protein glmU: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x GP1: 2-amino-2-deoxy-1-O-phosphono-alpha-D-glucopyranose(Non-covalent)
- 3 x CO: COBALT (II) ION(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 3 x COA: COENZYME A(Non-covalent)
- 3 x UD1: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Olsen, L.R. et al., Structure of the E. coli bifunctional GlmU acetyltransferase active site with substrates and products. Protein Sci. (2007)
- Release Date
- 2007-06-19
- Peptides
- Bifunctional protein glmU: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A