- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x GP1: 2-amino-2-deoxy-1-O-phosphono-alpha-D-glucopyranose(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 4 residues within 4Å:- Chain A: K.25, D.105, N.227
- Ligands: UD1.7
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.105, H2O.5, H2O.8
MG.3: 8 residues within 4Å:- Chain A: D.406
- Chain B: D.406
- Chain C: D.406
- Ligands: CO.4, MG.10, CO.11, MG.17, CO.18
5 PLIP interactions:1 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: B:D.406, C:D.406, A:D.406, H2O.8, H2O.33
MG.9: 4 residues within 4Å:- Chain B: K.25, D.105, N.227
- Ligands: UD1.14
3 PLIP interactions:1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.105, H2O.18, H2O.21
MG.10: 8 residues within 4Å:- Chain A: D.406
- Chain B: D.406
- Chain C: D.406
- Ligands: MG.3, CO.4, CO.11, MG.17, CO.18
5 PLIP interactions:1 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: B:D.406, C:D.406, A:D.406, H2O.8, H2O.21
MG.16: 4 residues within 4Å:- Chain C: K.25, D.105, N.227
- Ligands: UD1.21
3 PLIP interactions:1 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.105, H2O.30, H2O.33
MG.17: 8 residues within 4Å:- Chain A: D.406
- Chain B: D.406
- Chain C: D.406
- Ligands: MG.3, CO.4, MG.10, CO.11, CO.18
5 PLIP interactions:1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: C:D.406, A:D.406, B:D.406, H2O.21, H2O.33
- 3 x CO: COBALT (II) ION(Non-covalent)
CO.4: 11 residues within 4Å:- Chain A: D.406, Q.408
- Chain B: D.406, Q.408
- Chain C: D.406, Q.408
- Ligands: MG.3, MG.10, CO.11, MG.17, CO.18
5 PLIP interactions:1 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: B:D.406, C:D.406, A:D.406, H2O.24, H2O.37
CO.11: 11 residues within 4Å:- Chain A: D.406, Q.408
- Chain B: D.406, Q.408
- Chain C: D.406, Q.408
- Ligands: MG.3, CO.4, MG.10, MG.17, CO.18
5 PLIP interactions:1 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: B:D.406, C:D.406, A:D.406, H2O.11, H2O.37
CO.18: 11 residues within 4Å:- Chain A: D.406, Q.408
- Chain B: D.406, Q.408
- Chain C: D.406, Q.408
- Ligands: MG.3, CO.4, MG.10, CO.11, MG.17
5 PLIP interactions:1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: C:D.406, A:D.406, B:D.406, H2O.11, H2O.24
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 5 residues within 4Å:- Chain A: K.15, G.16, T.17, R.18
- Ligands: UD1.7
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:T.17, A:T.17, A:R.18
- Water bridges: A:K.25, A:K.25
- Salt bridges: A:R.18
SO4.12: 5 residues within 4Å:- Chain B: K.15, G.16, T.17, R.18
- Ligands: UD1.14
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:T.17, B:T.17, B:R.18
- Water bridges: B:K.25, B:K.25
- Salt bridges: B:R.18
SO4.19: 5 residues within 4Å:- Chain C: K.15, G.16, T.17, R.18
- Ligands: UD1.21
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:T.17, C:T.17, C:R.18
- Water bridges: C:K.25, C:K.25
- Salt bridges: C:R.18
- 3 x COA: COENZYME A(Non-covalent)
COA.6: 14 residues within 4Å:- Chain A: F.402, G.404, S.405, A.422, A.423, I.438, R.440
- Chain B: C.385, N.386, Y.387, V.410
- Chain C: K.446, W.449
- Ligands: GP1.1
10 PLIP interactions:1 interactions with chain B, 7 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: B:Y.387, A:S.405, A:A.423, A:R.440, A:R.440, A:R.440, C:K.446
- Hydrophobic interactions: A:A.422
- Water bridges: A:R.440
- Salt bridges: C:K.446
COA.13: 14 residues within 4Å:- Chain A: K.446, W.449
- Chain B: F.402, G.404, S.405, A.422, A.423, I.438, R.440
- Chain C: C.385, N.386, Y.387, V.410
- Ligands: GP1.8
10 PLIP interactions:1 interactions with chain C, 7 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: C:Y.387, B:S.405, B:A.423, B:R.440, B:R.440, B:R.440, A:K.446
- Hydrophobic interactions: B:A.422
- Water bridges: B:R.440
- Salt bridges: A:K.446
COA.20: 14 residues within 4Å:- Chain A: C.385, N.386, Y.387, V.410
- Chain B: K.446, W.449
- Chain C: F.402, G.404, S.405, A.422, A.423, I.438, R.440
- Ligands: GP1.15
10 PLIP interactions:7 interactions with chain C, 1 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: C:A.422
- Hydrogen bonds: C:S.405, C:A.423, C:R.440, C:R.440, C:R.440, A:Y.387, B:K.446
- Water bridges: C:R.440
- Salt bridges: B:K.446
- 3 x UD1: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE(Non-covalent)
UD1.7: 27 residues within 4Å:- Chain A: L.11, A.12, A.13, G.14, R.18, K.25, Q.76, Q.79, L.80, G.81, T.82, A.85, Y.103, G.104, D.105, V.106, Y.139, G.140, E.154, N.169, T.170, Y.197, I.198, T.199, N.227
- Ligands: MG.2, SO4.5
22 PLIP interactions:22 interactions with chain A- Hydrophobic interactions: A:Y.197
- Hydrogen bonds: A:A.13, A:G.14, A:G.14, A:R.18, A:Q.76, A:Q.76, A:G.81, A:T.82, A:G.104, A:D.105, A:G.140, A:E.154, A:E.154, A:N.169, A:T.170
- Water bridges: A:R.18, A:K.25, A:K.25, A:Q.193
- Salt bridges: A:R.18, A:K.25
UD1.14: 27 residues within 4Å:- Chain B: L.11, A.12, A.13, G.14, R.18, K.25, Q.76, Q.79, L.80, G.81, T.82, A.85, Y.103, G.104, D.105, V.106, Y.139, G.140, E.154, N.169, T.170, Y.197, I.198, T.199, N.227
- Ligands: MG.9, SO4.12
22 PLIP interactions:22 interactions with chain B- Hydrophobic interactions: B:Y.197
- Hydrogen bonds: B:A.13, B:G.14, B:G.14, B:R.18, B:Q.76, B:Q.76, B:G.81, B:T.82, B:G.104, B:D.105, B:G.140, B:E.154, B:E.154, B:N.169, B:T.170
- Water bridges: B:R.18, B:K.25, B:K.25, B:Q.193
- Salt bridges: B:R.18, B:K.25
UD1.21: 27 residues within 4Å:- Chain C: L.11, A.12, A.13, G.14, R.18, K.25, Q.76, Q.79, L.80, G.81, T.82, A.85, Y.103, G.104, D.105, V.106, Y.139, G.140, E.154, N.169, T.170, Y.197, I.198, T.199, N.227
- Ligands: MG.16, SO4.19
22 PLIP interactions:22 interactions with chain C- Hydrophobic interactions: C:Y.197
- Hydrogen bonds: C:A.13, C:G.14, C:G.14, C:R.18, C:Q.76, C:Q.76, C:G.81, C:T.82, C:G.104, C:D.105, C:G.140, C:E.154, C:E.154, C:N.169, C:T.170
- Water bridges: C:R.18, C:K.25, C:K.25, C:Q.193
- Salt bridges: C:R.18, C:K.25
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Olsen, L.R. et al., Structure of the E. coli bifunctional GlmU acetyltransferase active site with substrates and products. Protein Sci. (2007)
- Release Date
- 2007-06-19
- Peptides
- Bifunctional protein glmU: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x GP1: 2-amino-2-deoxy-1-O-phosphono-alpha-D-glucopyranose(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 3 x CO: COBALT (II) ION(Non-covalent)
- 3 x SO4: SULFATE ION(Non-functional Binders)
- 3 x COA: COENZYME A(Non-covalent)
- 3 x UD1: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Olsen, L.R. et al., Structure of the E. coli bifunctional GlmU acetyltransferase active site with substrates and products. Protein Sci. (2007)
- Release Date
- 2007-06-19
- Peptides
- Bifunctional protein glmU: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
B