SMTL ID : 2oih.1

Hepatitis Delta Virus gemonic ribozyme precursor with C75U mutation and bound to monovalent cation Tl+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

15 x TL: THALLIUM (I) ION(Non-functional Binders)

TL.1: 3 residues within 4Å: Chain A: U.23, C.25, U.66 Ligand excluded by PLIP TL.2: 1 residues within 4Å: Chain A: C.60 Ligand excluded by PLIP TL.3: 2 residues within 4Å: Chain A: G.61, G.62 Ligand excluded by PLIP TL.4: 2 residues within 4Å: Chain A: G.71, G.72 Ligand excluded by PLIP TL.5: 3 residues within 4Å: Chain A: G.31, G.32 Ligands: TL.11 Ligand excluded by PLIP TL.6: 1 residues within 4Å: Chain A: C.59 Ligand excluded by PLIP TL.7: 4 residues within 4Å: Chain A: U.3, G.4, G.5, U.66 Ligand excluded by PLIP TL.8: 2 residues within 4Å: Chain A: G.41, G.42 Ligand excluded by PLIP TL.9: 4 residues within 4Å: Chain A: C.36, G.37, G.38 Ligands: TL.10 Ligand excluded by PLIP TL.10: 3 residues within 4Å: Chain A: G.37, G.38 Ligands: TL.9 Ligand excluded by PLIP TL.11: 4 residues within 4Å: Chain A: G.28, G.31, G.32 Ligands: TL.5 Ligand excluded by PLIP TL.12: 2 residues within 4Å: Chain A: G.13, G.14 Ligand excluded by PLIP TL.13: 2 residues within 4Å: Chain A: C.7, G.8 Ligand excluded by PLIP TL.14: 3 residues within 4Å: Chain A: A.19, G.20, C.21 Ligand excluded by PLIP TL.15: 1 residues within 4Å: Chain A: G.31 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ke, A. et al., Structural roles of monovalent cations in the HDV ribozyme. Structure (2007)

Release Date

2007-03-27

Peptides

U1 small nuclear ribonucleoprotein A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

U1 small nuclear ribonucleoprotein A

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