SMTL ID : 2orr.1

Murine Inducible Nitric Oxide Synthase Oxygenase Domain (Delta 114) 4-(Benzo[1,3]dioxol-5-yloxy)-2-(4-imidazol-1-yl-phenoxy)-pyrimidine Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 19 residues within 4Å: Chain A: W.75, A.78, P.79, R.80, C.81, I.82, G.83, Q.86, L.90, S.123, M.236, F.250, N.251, G.252, W.253, M.255, Y.370, Y.372 Ligands: 333.2 18 PLIP interactions: 18 interactions with chain A, Hydrophobic interactions: A:W.75, A:W.75, A:R.80, A:I.82, A:L.90, A:L.90, A:F.250, A:F.250, A:F.250, A:W.253, A:W.253, A:Y.370, A:Y.370 Hydrogen bonds: A:R.80, A:Y.372 Salt bridges: A:R.80 pi-Stacking: A:W.75 Metal complexes: A:C.81 HEM.7: 19 residues within 4Å: Chain B: W.75, A.78, P.79, R.80, C.81, I.82, G.83, Q.86, L.90, S.123, M.236, F.250, N.251, G.252, W.253, M.255, Y.370, Y.372 Ligands: 333.8 19 PLIP interactions: 19 interactions with chain B, Hydrophobic interactions: B:W.75, B:W.75, B:R.80, B:I.82, B:L.90, B:L.90, B:F.250, B:F.250, B:F.250, B:W.253, B:W.253, B:Y.370, B:Y.370 Hydrogen bonds: B:R.80, B:Y.372, B:Y.372 Salt bridges: B:R.80 pi-Stacking: B:W.75 Metal complexes: B:C.81

2 x 333: 4-(1,3-BENZODIOXOL-5-YLOXY)-2-[4-(1H-IMIDAZOL-1-YL)PHENOXY]PYRIMIDINE(Non-covalent)

333.2: 7 residues within 4Å: Chain A: Q.144, P.231, V.233, G.252, W.253, Y.254 Ligands: HEM.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.231, A:Y.254 Hydrogen bonds: A:Q.144 333.8: 7 residues within 4Å: Chain B: Q.144, P.231, V.233, G.252, W.253, Y.254 Ligands: HEM.7 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:P.231, B:Y.254 Hydrogen bonds: B:Q.144

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 1 residues within 4Å: Chain A: W.87 No protein-ligand interaction detected (PLIP) EDO.4: 3 residues within 4Å: Chain A: I.68, F.69, K.72 No protein-ligand interaction detected (PLIP) EDO.5: 3 residues within 4Å: Chain A: N.2, P.3, K.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.2, A:N.2 EDO.6: 4 residues within 4Å: Chain A: V.365, L.366, F.369, Y.371 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.366, A:L.366, A:Y.371 EDO.9: 1 residues within 4Å: Chain B: W.87 No protein-ligand interaction detected (PLIP) EDO.10: 3 residues within 4Å: Chain B: I.68, F.69, K.72 No protein-ligand interaction detected (PLIP) EDO.11: 3 residues within 4Å: Chain B: N.2, P.3, K.4 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.2, B:N.2 EDO.12: 4 residues within 4Å: Chain B: V.365, L.366, F.369, Y.371 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.366, B:L.366

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davey, D.D. et al., Design, Synthesis, and Activity of 2-Imidazol-1-ylpyrimidine Derived Inducible Nitric Oxide Synthase Dimerization Inhibitors. J.Med.Chem. (2007)

Release Date

2007-04-17

Peptides

Nitric oxide synthase, inducible: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Nitric oxide synthase, inducible

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