SMTL ID : 2osw.1 (1 other biounit)

Endo-glycoceramidase II from Rhodococcus sp.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Chain A: N.213, V.216 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.213, A:V.216 NA.2: 2 residues within 4Å: Chain A: A.153, T.156 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.156, A:T.156

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 9 residues within 4Å: Chain A: K.57, H.126, D.128, W.169, N.223, E.224, Y.297, E.342, W.373 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.57, A:K.57, A:N.223, A:N.223, A:E.342 Water bridges: A:S.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Caines, M.E. et al., Structural and Mechanistic Analyses of endo-Glycoceramidase II, a Membrane-associated Family 5 Glycosidase in the Apo and GM3 Ganglioside-bound Forms. J.Biol.Chem. (2007)

Release Date

2007-02-27

Peptides

Endoglycoceramidase II: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endoglycoceramidase II

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