SMTL ID : 2oym.1 (1 other biounit)

Endo-glycoceramidase II from Rhodococcus sp.: five-membered iminocyclitol complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Chain A: N.213, V.216 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.216, A:V.216

1 x MNI: N-{[(2R,3R,4R,5R)-3,4-DIHYDROXY-5-(HYDROXYMETHYL)PYRROLIDIN-2-YL]METHYL}-4-(DIMETHYLAMINO)BENZAMIDE(Non-covalent)

MNI.2: 14 residues within 4Å: Chain A: K.57, H.126, D.128, W.169, E.170, Y.173, N.223, E.224, F.226, I.267, N.270, Y.297, E.342, W.373 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:E.170, A:E.170, A:Y.173 Hydrogen bonds: A:K.57, A:K.57, A:N.223, A:N.223, A:E.224, A:E.224, A:N.270

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Caines, M.E. et al., The structural basis of glycosidase inhibition by five-membered iminocyclitols: the clan a glycoside hydrolase endoglycoceramidase as a model system. Angew.Chem.Int.Ed.Engl. (2007)

Release Date

2007-03-06

Peptides

Endoglycoceramidase II: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endoglycoceramidase II

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